Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5339g00002 ATGATATCAGGTCGGTGTGCAGCTTGCAGGAATCAAAGAAGAAAATGCCCTTCAGATTGCATTTTCTCTCCTTATTTCCCTTCTAATGATCCTCAAAGATATGCTAGCGTTCGCAGAATATATGGTGGCAGCAACGTTGGAAAAATGCTTAAGCAAATTCCACTCTATGTCCGAGCACATGCTGCAGATAGTTTATATTATGAAGCACAATGTCGTATTCAAGATCCTATTTATGGTTGTTATGGAATTATCTCTCGACTTGTTCAACAAATTCATAATACAGAAACTGAGTTGGTCAAAATTCAAGCTCAAAATAGCATTCTCAAGCTTCAAAACCCACAAGTTGAATATGTAATAAATATGGACGACTTGTTTGCACAGCGTAACATGGGGCAGTTTCAGTTTGGCGACCATTCAAGCCAAACTCATTGGTTCAAA 438 0.3836 MISGRCAACRNQRRKCPSDCIFSPYFPSNDPQRYASVRRIYGGSNVGKMLKQIPLYVRAHAADSLYYEAQCRIQDPIYGCYGIISRLVQQIHNTETELVKIQAQNSILKLQNPQVEYVINMDDLFAQRNMGQFQFGDHSSQTHWFK 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5339g00002 146 Coils Coil 84 104 - -
Mupr5339g00002 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Mupr5339g00002 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Mupr5339g00002 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5339g00002 Mupr-Chr5339 13132 14261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5339g00002 1 116 AS2 family AT3G26660 53.448 5.50e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mupr5339g00002 LOB 4.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5339g00002 - - lang:109328513 186.037