Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5339g00001 ATGTGTATGCTTATGCAATTTGTGAGATCCGCATCTTTGTCTTGGTCAACACCAAAAATATCTGTGACTCTCTCTGCTCTGCTTAGGGTTTCAACTTCCAACCCAACACTTATCTTTCTCATGCAAGGGAAAATGAGGCCAATTTTCTGCGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCCGGATTTGCTTTTATCTATATGGAAGACGACAGAGATGCTGAGGCTGCAATCCGTGCTCTTGATCGGGTAGAATTTGGGCGGAAGGGACGCAGACTCCGCGTGGAATGGACAAAGCATGAACGTGGCGTTAGAAAGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCGTCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACTAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGTGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGCGGAATGGATATAGTCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGACGATCACCCAGTCCTTATCGTAGAGAAAGGGGCAGTCCTGATTATGGCCGTGGGTCCAGTCCATATCAGAGAAAGCGGGGCAGCCCTGACTATGGTCGCCGCGACCGTAGCCGTAGCAGAAGCCCCCAGCAGAGAGACCGAGCTAGCCCTGCTTATGGGCGTAGAAGCCTTAGTCCATATAGAAGAGAGAGGGAGGGTTCTGACCCTATGCATGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGCAGAACTGACCATAACATTTCCCCTTCCCATAGTCCCGAAGGAAGAGGGAGGAGAAGTCCTCCCCCTTCCCATAGTCCCGAAGGAAGAGGGAGGAGAAGCCCTCAAAATGGACGCGGTTCTAGCCGCAGTCCTCGTGATAATACTGGGAAGGCTAGCCCTGAAAACGGACATGGCTCCGGTAGTCCTGATGAAAAAGGGAATGCTAGCCCTTACAATGGTTATGGAGGGAGCCCAAATGCTGTGCCTGATCCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGGTTTGCAACTATGGTGGTCCTAGATTTTTTCTTATTCCTATTTATTTTCTTCATTGTTTTAATTCTGTTCATTTCTGATAATGCAGCCAGTCACCCCCTGCAGAAGAATGATTTCAGTCTTTGA 1389 0.4752 MCMLMQFVRSASLSWSTPKISVTLSALLRVSTSNPTLIFLMQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRKPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGSSPYQRKRGSPDYGRRDRSRSRSPQQRDRASPAYGRRSLSPYRREREGSDPMHDSSRSPYHKERGRTDHNISPSHSPEGRGRRSPPPSHSPEGRGRRSPQNGRGSSRSPRDNTGKASPENGHGSGSPDEKGNASPYNGYGGSPNAVPDPRDSPNYGGPESPMHERYRRFATMVVLDFFLFLFIFFIVLILFISDNAASHPLQKNDFSL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5339g00001 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 203 IPR000504 GO:0003723
Mupr5339g00001 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 106 IPR000504 GO:0003723
Mupr5339g00001 462 MobiDBLite consensus disorder prediction 212 250 - -
Mupr5339g00001 462 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 140 360 - -
Mupr5339g00001 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 118 IPR000504 GO:0003723
Mupr5339g00001 462 FunFam Serine/arginine-rich splicing factor RS31 131 221 - -
Mupr5339g00001 462 MobiDBLite consensus disorder prediction 353 374 - -
Mupr5339g00001 462 MobiDBLite consensus disorder prediction 212 413 - -
Mupr5339g00001 462 MobiDBLite consensus disorder prediction 263 279 - -
Mupr5339g00001 462 MobiDBLite consensus disorder prediction 293 330 - -
Mupr5339g00001 462 SUPERFAMILY RNA-binding domain, RBD 46 211 IPR035979 GO:0003676
Mupr5339g00001 462 FunFam Serine/arginine-rich splicing factor RS31 45 129 - -
Mupr5339g00001 462 CDD RRM1_AtRSp31_like 46 117 - -
Mupr5339g00001 462 Gene3D - 42 130 IPR012677 -
Mupr5339g00001 462 Gene3D - 131 221 IPR012677 -
Mupr5339g00001 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 210 IPR000504 GO:0003723
Mupr5339g00001 462 SMART rrm1_1 47 114 IPR000504 GO:0003723
Mupr5339g00001 462 SMART rrm1_1 140 206 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5339g00001 Mupr-Chr5339 2831 6587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5339g00001 44 213 Eukaryotic Initiation Factors Gene Family AT1G49760 24.064 4.59e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5339g00001 K12893 - gmx:100796509 628.246