LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5323g00005	ATGGCCTCTCACCAAGCCACCGTCACCACCGCCACAGCCGCCACTCCCAGCGAAACATCTAACAGCAACAGCAGTGGCAGCAGCAACAAAAGCAAAGCCAAACCCAAAGCAAAAGGCAAAGGTGGCCCCGACAACAACAAGTTTAGGTACCGCGGTGTCAGGCAACGAAGCTGGGGCAAGTGGGTCGCCGAGATCCGCGAACCGCGTAAGCGCACGCGCAAGTGGCTCGGCACCTTCTCCACCGCCGAGGACGCCGCCCGAGCCTATGACCGCGCCGCCCTCATCCTCTACGGTTCCCGCGCCCAGCTAAACCTCCAACCCTCCGGTTCCTCTTCCCACTCTTCCTCTTCGCGTGCCTCTACCTCTACCTCTACCTCTTCCTCTCAAACCCTAAGACCCTTGCTCCCTCGTCCTTCTGGCTTTGGTTACACTTTTTCTTCCTCCGCTTCCAATTTTCCTAAGCCTTTCAACGCCGCCATGCCTTACCCCTACGGTGGCGCGTATAACAGTAGTTACAATTACACCCCGCCGCTGTTATGCCCTAGTAATAATAATATAGTGCAACTTCATCCACATCACTACCGCCGTCCCGATGAAGTGGTGCAAGTGCCGCAACAGTATCAGCAAGCGGAATCTAAAGTGAGTTTGGGTGGGAATATTGTGGATAGTTCTGTTAGATCAACCTCGTACCGAAGGGATAATAATCATGTGCAACATGGTGTTTTGTCGAATGAACCGCAACATGAGAATAGTGTTGTGGATGGAGTGAATTCCGTTGAGGGATCGGTAAATATGAATGATGGGTCTGTGGATCCGGATCTACCGTTGGTGGGGACGGTGGGACTTGGATCTCCGTCAATATGGTCGTTGACGAATGTGGATGATTACAGTACTGATCTAATTTATCTGGTGAGTGACGCTCTGGAAATCTAA	933	0.5263	MASHQATVTTATAATPSETSNSNSSGSSNKSKAKPKAKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAALILYGSRAQLNLQPSGSSSHSSSSRASTSTSTSSSQTLRPLLPRPSGFGYTFSSSASNFPKPFNAAMPYPYGGAYNSSYNYTPPLLCPSNNNIVQLHPHHYRRPDEVVQVPQQYQQAESKVSLGGNIVDSSVRSTSYRRDNNHVQHGVLSNEPQHENSVVDGVNSVEGSVNMNDGSVDPDLPLVGTVGLGSPSIWSLTNVDDYSTDLIYLVSDALEI	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5323g00005	310	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	21	235	-	-
	Mupr5323g00005	310	SMART	rav1_2	49	112	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	MobiDBLite	consensus disorder prediction	1	52	-	-
	Mupr5323g00005	310	CDD	AP2	49	106	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	FunFam	Ethylene-responsive transcription factor 2	49	107	-	-
	Mupr5323g00005	310	MobiDBLite	consensus disorder prediction	37	51	-	-
	Mupr5323g00005	310	MobiDBLite	consensus disorder prediction	1	32	-	-
	Mupr5323g00005	310	PRINTS	Ethylene responsive element binding protein signature	72	88	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	MobiDBLite	consensus disorder prediction	105	133	-	-
	Mupr5323g00005	310	Gene3D	AP2/ERF domain	48	106	IPR036955	GO:0003700\|GO:0006355
	Mupr5323g00005	310	ProSiteProfiles	AP2/ERF domain profile.	49	106	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	Pfam	AP2 domain	49	98	IPR001471	GO:0003700\|GO:0006355
	Mupr5323g00005	310	SUPERFAMILY	DNA-binding domain	49	106	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5323g00005	Mupr-Chr5323	52063	53788	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5323g00005	33	297	AP2-EREBP Transcription Factor Family	AT2G40220	45.329	1.16e-39	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mupr5323g00005		AP2	9.1e-13	CL0081