Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5269g00003 ATGGCAAAGGCCACATCTCCCTCCTCAAATGATTTTCAAGAACAACAAATGTTTCCTGTTAATGAATATTTGGTTTCAGTTTCACCCTCTGCCTCAGCTTCACACTCTTCCACCTCCCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTCAATCAACTCCAGAACCTGGTTGACTCATCAACTCCCATGGCTATCAACGCCACAATCCAAGAAATCATAGTAGCAGCCACTTCAATGAGGTTCACATGCCAACAAATGATTCTTGGTTCCTCTCCAGGTACTACTAATGAATTGCACCATCAACAAATTGATCATGATAGATTATTACCACCACATCACCATCAATCAAACTTAATGAACAACAATAGGGGTGTGTCTTGTAACGTTAACTTGGCCTCAAACATAATTAGAGGGCAAAGTAGTTTCTTATCTAATATTGAGGGAGAGGCAATTGATTGGTTTCCTGAAAGCTATAACAATAGTGAGAATAGTAGCATTAAGGATGATGAAGGGAACGTGAGAGGAGAGAGTGACATAATTGAATTGCATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTCACGCGCGATGCAAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACAAGTGCAGCCTTGAGCAACCCAATGAAGAAGAAGGAGAGTGTATTGGGTGAGGGAAGTGGCACAAAGAAATATTCTTGCCCTCAGGAAGGGTGTAGGTGGAACCAAAGGCACGCCAAGTTCCAGCCCTTGAAGTCAATGATTTGTGCAAAGAACCATTACAAGAGAAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCTGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGTTCCTGTGGCACCACGTTCTCTAGAAAAGACAAGCTTGTGGGACATGTTGCTTTGTTCGTGGGGCATACCCCAGCTATTAGTGGCTTCTCAATGACTAAATACTAA 1047 0.4384 MAKATSPSSNDFQEQQMFPVNEYLVSVSPSASASHSSTSLLFYLSLLKDKLNQLQNLVDSSTPMAINATIQEIIVAATSMRFTCQQMILGSSPGTTNELHHQQIDHDRLLPPHHHQSNLMNNNRGVSCNVNLASNIIRGQSSFLSNIEGEAIDWFPESYNNSENSSIKDDEGNVRGESDIIELHAADLLAKYSYFCQVCGKGFTRDANLRMHMRAHGEEYKTSAALSNPMKKKESVLGEGSGTKKYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLVGHVALFVGHTPAISGFSMTKY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5269g00003 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Mupr5269g00003 348 SUPERFAMILY beta-beta-alpha zinc fingers 191 253 IPR036236 -
Mupr5269g00003 348 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 341 IPR044300 GO:0010044|GO:0010447
Mupr5269g00003 348 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Mupr5269g00003 348 FunFam Zinc finger protein-like 193 217 - -
Mupr5269g00003 348 Pfam Zinc finger, C2H2 type 194 216 IPR013087 -
Mupr5269g00003 348 Gene3D Classic Zinc Finger 282 332 - -
Mupr5269g00003 348 Gene3D Classic Zinc Finger 190 218 - -
Mupr5269g00003 348 SMART c2h2final6 246 279 IPR013087 -
Mupr5269g00003 348 SMART c2h2final6 284 306 IPR013087 -
Mupr5269g00003 348 SMART c2h2final6 194 216 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5269g00003 Mupr-Chr5269 29812 31818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5269g00003 20 339 C2H2 Transcription Factor Family AT5G22890 49.853 7.02e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr5269g00003 zf-C2H2 9.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5269g00003 - - vum:124833786 504.212