Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5262g00002 ATGAGTAACTGGTTGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGAGAGAGAAAATCAAGAGCGTGAAGGAGGCTATCCTCCTTCCCATCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGATTCCTTTACCCACTCTGCTGCACCTCAAGAATGGAGATATGATAATGCAATAGGTGGAGGGAATTCCAATGAAGAAGGTCCAAAGCTTGAAGACTTTTTGGGCTGCTACTCAAACTCCCCCATGGCTGAATCCAAAGTCTTTTGCCAAGACTCTCAACATGACCAAAACCAAGGCCAGAATAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATGCAGAGATTGAAACTGGGGAGAGCCTCACAAACCCATCTTCATTGCTTCAGTCTTTTCATGCATATAATGATAACTCACATGCCCTTATCCCCACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGAAGGAAAGCCTTCAGCTGAGGCTAATGGGTGCAATTTCAATTCTCTGTCCCTCACTATGAGCTCTAGTGTGCAAAACGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAGTGAGGACAATAGGAAACGGATCATGGCAAAATCTCATTCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTCACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTGTAAGGTTTCTGAAAACTTGTACACTTTTCTCCTTTGCAAAAGTTTTGCCCTTGCTCCTAGTCTTGCAACAGTACAAAATAGAAGCGAGGGAACTAAATTATTTAGAAAAGTCAAATATTTCCTATGTATTTAATTTATGTGGCTTCAACCATTACATAGTAACTGTGATCACTCTACATGTGTACCGCTTCTTAAATGCTCAGCTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGTAAATTCTCTCTTTCCCCCTCTTATTCAACATGGAAGGAATCGTCCTTTTTGTTTCCCTCGGCCAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAGGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTAACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACTCTCATTGCAGGAGATCTTGCAAAACGGTCTCCTAAAGAACTGGTTCCGGCCACCGCTGCCACCGATGACTTCAACTCGAGTGGTTCGTCGATGCCGGCTCAGCCACCTCCTATGGCCATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCAAACAGTGATGAGCAAGCACAGAATGAGAGTGCTAACATGAACAATGGCACTGAATCATCACAACAGGTTTCACCAAGCAACAAGGATGCCTTGAACCCTCAAAGCCCCAAGTGTTCTGTGAATGAGTTTGGAGTCGGTGGATCAGCAGATTATGGACATGGTTACTTCACCCTTGATGGACCAAAATTTGATGATGGAAACAATGAAAGTGACCACATGAACACCAACAGGCTCGGAAATTTGGGACTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1965 0.4397 MSNWLGFSLTPHLRIDEEFERENQEREGGYPPSHPHLSVMPLRSDGSLCVADSFTHSAAPQEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPMAESKVFCQDSQHDQNQGQNNVSKINVNVAPSFCTNAEIETGESLTNPSSLLQSFHAYNDNSHALIPTNGMYKSWLAQTQFSEGKPSAEANGCNFNSLSLTMSSSVQNGVGAISSVQVSEDNRKRIMAKSHSREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPVRFLKTCTLFSFAKVLPLLLVLQQYKIEARELNYLEKSNISYVFNLCGFNHYIVTVITLHVYRFLNAQLSTYEKELEEMKHMTRQEFVANLRSKFSLSPSYSTWKESSFLFPSARKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKELVPATAATDDFNSSGSSMPAQPPPMAITDGEHSDELSNMMWNANSDEQAQNESANMNNGTESSQQVSPSNKDALNPQSPKCSVNEFGVGGSADYGHGYFTLDGPKFDDGNNESDHMNTNRLGNLGLVNQVPMFALWNE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5262g00002 654 Pfam AP2 domain 242 297 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 Pfam AP2 domain 430 481 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 Coils Coil 367 387 - -
Mupr5262g00002 654 Gene3D AP2/ERF domain 241 307 IPR036955 GO:0003700|GO:0006355
Mupr5262g00002 654 Gene3D AP2/ERF domain 431 491 IPR036955 GO:0003700|GO:0006355
Mupr5262g00002 654 MobiDBLite consensus disorder prediction 523 537 - -
Mupr5262g00002 654 SUPERFAMILY DNA-binding domain 241 307 IPR016177 GO:0003677
Mupr5262g00002 654 ProSiteProfiles AP2/ERF domain profile. 242 305 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 CDD AP2 241 306 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 FunFam AP2-like ethylene-responsive transcription factor 430 491 - -
Mupr5262g00002 654 MobiDBLite consensus disorder prediction 523 547 - -
Mupr5262g00002 654 MobiDBLite consensus disorder prediction 563 597 - -
Mupr5262g00002 654 ProSiteProfiles AP2/ERF domain profile. 431 489 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 571 - -
Mupr5262g00002 654 SMART rav1_2 431 495 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 SMART rav1_2 242 311 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 SUPERFAMILY DNA-binding domain 430 491 IPR016177 GO:0003677
Mupr5262g00002 654 CDD AP2 430 491 IPR001471 GO:0003700|GO:0006355
Mupr5262g00002 654 FunFam AP2-like ethylene-responsive transcription factor ANT 241 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5262g00002 Mupr-Chr5262 5944 9249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5262g00002 1 514 AP2-EREBP Transcription Factor Family AT1G72570 42.251 3.82e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mupr5262g00002 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5262g00002 K09285 - gmx:100809762 551.592