Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5258g00003 ATGATTAAATTAGCACGTTATCTTCCTATAATATGTGTGGGTCTCTTAGGAACGAAGGACCAACCAACAAAGCAAGCATGGCTATACTATAGAGCAAGTTCACTTCTCAGTACGTGTCAGAACACACATCCCCCAATCCAATTATTCACCTCTCTACCTATTTCATTTCCCCACTCTCCCCTCACACAATCTACGCTCAAAACCCTCCCAAGAGGCAAAAATATAATAATTATAATTTCTTTCTGCTATTTTTTTCTCTCCACTACCATGGCTACCATAACAGACCAAGACTTCTCCTCGCGTGCCTCGCACGTGCTCGACTACGCCGCCACCACTACCTCGGACGAGGACAGCGAGGAGGAGGAGCACGTGCGAGACGAGAATGAGAACGAGAACGAGAACGAGTCCGCCGGCGTGGGGTGGTGGGTGGCGGCGGTGTGCGGCGGAGAACGGCGGAGCGGAGGAGGCGCGTTGGGTCGGGTCCTGGACCCGAGAGCGAAGTGGGTCCAAGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTCGTAGACCCTCTCTTCTTCTACGCGCTCTCCGTTAGCGACTCGTGCATGTGCGTCTTCGTCGATGGATGGCTCGCCGTTACCGTCACCGTGCTGCGGTGCATGACCGACACGCTGCACCTGTGGAACATGGTGCTGCGAATGAAGATGGCGAAACGCGCGTTCGGCTTGGGCACCGCCGATGCCGCCGGTGGGTCCTCCGCCGGACTTAGAGACACGAGGCCGCGCTCCGTCGCGCTTGGGTATCTTAAGTCACGGACGGGATTCTTTTTTGACTTGTTCGTTATTCTTCCTCTGCCACAGTGTGACTGTGTTTTCATTTTCATTTCTTGTTGTTTGCATTGTACTGAAGGAAATTTTGAAGGGAGATTTTTGTCATCATTCTTAGAAGGTAACTCACGGCACTTGTATGATGTGCTGAGAACACCAAAATATACACGTTACAGTCTGTTACATGAAACCAGGATGGGAGCCACAGATTTAGATACAGCCAATCTGATTCTGATTCTTTGTCTGATTATAATTTCTTATGCGTGGTCCCCTAAAATATCTTTACATGATTGTATGATTGTGCTTCGGGTGGCAATCCCGTCGTTGTTGGAGAAAGGTTCAGTTACGTTGGTGATGACAGTGTTCTTAATTATATTTCTCTTCCAATACCTTCCCAAAATTTATCATTCGGTTTGCCATCTGCGGCGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATCGCCTATTTTGTTGCTTCCCATGCAGCAGGGGCTTGTTGGTACTTGCTGGGGATCCAAAGGGCAGCAAAGTGTCTGAAAGTGCAGTGTGAGAAAACAAGTGGTTGTGGTATGAATATTCTGTCTTGTCAAACTCCTATATATTATGGAAGCAAAAGTTTGTTAGTTAGGGACAAAGCAAGATTGGCATGGGCTCAGAACAGGGAAGTGAGGTACACTTGCTTAAATGGCCCTGAGAACTACAACTATGGAGCTTATAGATGGACTGTTCAGCTCGTCACTAATGACAATCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGAAACCTGGAGAGTACAACTGACTGGCTAGAGGTAGTTTTCAACATTATTGTGCTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATAAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGGGGAAACGGCGCTTGCCGCAAGGGTTTAGGCAGCGCGTGCGTAACTACGAGAGGCAGCGTTGGGCTGCTATGCGTGGGGTTGATGAATACGAGATGACCAAAAATCTCCCTGAGGGGTTAAGAAGAGACATCAAGTACCATCTTTGTTTAGACTTGGTCAGACAGGTGCCACTATTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCGAGAGAAGGAGACCCAGTTCAGCGAATGCTATTCGTAGTGAGGGGTCACCTTCAGAGCAGCCAAGTCCTAAGGGACGGAGTAAAAAGCTGCTGCATGTTAGGTCCAGGGAACTTCAGTGGGGACGAGCTCCTATCGTGGTGTTTAAGGAGACCCTTCATAGAGCGGCTTCCACCATCGTCATCAACGCTAATCACGTTGGAAACCACTGAGGCGTTTGGCCTTGAAGCTGAGGACGTGAAGTACGTGACCCAACATTTCAGGTACACCTTCGTTAAGGAAAAAGTTAAGAGAAGTGCAAGGTATTACTCGCCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCATGGAGGAGGTACAAACACAGGTTGACTTTGACTTCTTTGTCCTTTATAAGGCCAAGGAGGCCTTTGTCTCGCTCTTCTTCCTTAGGCGAGGACAGGCTTCGCCTCTACACTGCCTTGTTAACCTCCCCCAAACCCAATCAAGATGATTTTGACTTCTGA 2601 0.4825 MIKLARYLPIICVGLLGTKDQPTKQAWLYYRASSLLSTCQNTHPPIQLFTSLPISFPHSPLTQSTLKTLPRGKNIIIIISFCYFFLSTTMATITDQDFSSRASHVLDYAATTTSDEDSEEEEHVRDENENENENESAGVGWWVAAVCGGERRSGGGALGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDTLHLWNMVLRMKMAKRAFGLGTADAAGGSSAGLRDTRPRSVALGYLKSRTGFFFDLFVILPLPQCDCVFIFISCCLHCTEGNFEGRFLSSFLEGNSRHLYDVLRTPKYTRYSLLHETRMGATDLDTANLILILCLIIISYAWSPKISLHDCMIVLRVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCEKTSGCGMNILSCQTPIYYGSKSLLVRDKARLAWAQNREVRYTCLNGPENYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMGKRRLPQGFRQRVRNYERQRWAAMRGVDEYEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNQDDFDF 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5258g00003 866 FunFam cyclic nucleotide-gated ion channel 4 667 785 - -
Mupr5258g00003 866 SUPERFAMILY Voltage-gated potassium channels 164 590 - -
Mupr5258g00003 866 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 376 831 - -
Mupr5258g00003 866 MobiDBLite consensus disorder prediction 111 136 - -
Mupr5258g00003 866 FunFam Cyclic nucleotide-gated ion channel 1 596 660 - -
Mupr5258g00003 866 SUPERFAMILY cAMP-binding domain-like 595 783 IPR018490 -
Mupr5258g00003 866 Gene3D Helix hairpin bin 594 660 - -
Mupr5258g00003 866 CDD CAP_ED 669 775 IPR000595 -
Mupr5258g00003 866 ProSiteProfiles cAMP/cGMP binding motif profile. 669 779 IPR000595 -
Mupr5258g00003 866 MobiDBLite consensus disorder prediction 113 128 - -
Mupr5258g00003 866 Gene3D Jelly Rolls 667 785 IPR014710 -
Mupr5258g00003 866 Pfam Cyclic nucleotide-binding domain 690 777 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5258g00003 Mupr-Chr5258 11788 22831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5258g00003 374 865 Ion Channels AT5G54250 84.756 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5258g00003 K05391 - gmx:100796761 958.362