Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5248g00001 AGTTTCAGCACGCAAGATGAGCTACAGCCCATAGGACAGAACCGGCCCAATCCACAGGACGAGAAGTGCGGCGGCTTGTGTTGCGTTGGATCATCGACAGAGAAAATGCCTTCACACAAGACGTTCAGGATCAAGAAGAAGCTTGCCAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGCATGAGGACCGACAACACTATAAGGTATAATGCTAAGCGCAGGCACTGGCGCCGCACCAAACTTGGATTTTAA 261 0.5134 SFSTQDELQPIGQNRPNPQDEKCGGLCCVGSSTEKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5248g00001 86 Pfam Ribosomal L39 protein 44 84 IPR000077 GO:0003735|GO:0005840|GO:0006412
Mupr5248g00001 86 ProSitePatterns Ribosomal protein L39e signature. 65 81 IPR020083 GO:0003735|GO:0005840|GO:0006412
Mupr5248g00001 86 PANTHER RIBOSOMAL PROTEIN L39E 28 86 - -
Mupr5248g00001 86 MobiDBLite consensus disorder prediction 1 16 - -
Mupr5248g00001 86 Gene3D Ribosomal protein L39e 36 86 IPR023626 -
Mupr5248g00001 86 MobiDBLite consensus disorder prediction 1 23 - -
Mupr5248g00001 86 Hamap 50S ribosomal protein L39e [rpl39e]. 36 86 IPR000077 GO:0003735|GO:0005840|GO:0006412
Mupr5248g00001 86 SUPERFAMILY Ribosomal protein L39e 38 85 IPR023626 -
Mupr5248g00001 86 FunFam 60S ribosomal protein-like L39 36 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5248g00001 Mupr-Chr5248 1739 2420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5248g00001 36 86 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 1.04e-29 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5248g00001 K02924 - gmx:100306305 112.849