Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5240g00006 ATGGCGGAGGGGAAGGAAGAGAGTAAATCTAGTAGCGAGGAGAGTGTGAAACTGTTCGTGGGTCAAGTGCCGAAGCGCATGACGGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTGGACGAGGTCAACGTCATCAGAGACAAAGCTACTCGTGCCTCGCGAGGTTGTTGCTTTGTAGTTTGTCCCTCCAGGGAAGAAGCGGATAAGGCGGTGAATGCCTGTCATAACAAGAAAACGCTTCCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTTATCGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAAAGTATGGAACTATAAAGGATTTACAGATGTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTAAAGTATGAAACCAAAGAACAGGCCCTTGCTGCACTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTATTCCTTTGGTTGTTAAATTGGCAGATACTGAAAAGGAAAGACAAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAATGTGCCACATGCTGATCCACAACACCCCTCATTATTTGGAGCCTTGCCGATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGTTTGCTACCAATGCAGAATCAACCAGGTTTCCATAATATGATGCCTCACATGAACCAAGGAAATAGAGTGGGGCCTGATCTTGGTCACAATATGAACCCTAGAAATTATCCTGCACCTCCTGCAAGTTACATTGGCTCTTATCCTGCTGTGCCAAGTATACAGCATCCAATGGTATATCCCAGAGGAATTGTAAGTCCGAGGCTAGTGAGTAGTTCTCCTGGTTCTGTTTCACCTGCTGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGAAGTTCCAATGGTCAGATTGAAGGTCCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGATCTTGCAACTGCATTTCAACCGTTTGGTAGGGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACTGGTGTGAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCTGAAGCTGCCATTAGTGTGATGAATGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGGGTAAGCTTTACTGA 1293 0.4416 MAEGKEESKSSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNVIRDKATRASRGCCFVVCPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGTIKDLQMLRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSIPLVVKLADTEKERQARRAQKAQSQVSNVPHADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRLLPMQNQPGFHNMMPHMNQGNRVGPDLGHNMNPRNYPAPPASYIGSYPAVPSIQHPMVYPRGIVSPRLVSSSPGSVSPAGGNSNSSSSGARSSNGQIEGPPGANLFIYHIPQEYGDQDLATAFQPFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAEAAISVMNGCQLGGKKLKVQLKRDNKQGKLY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5240g00006 430 FunFam RNA-binding protein BRN1 313 422 - -
Mupr5240g00006 430 Gene3D - 2 100 IPR012677 -
Mupr5240g00006 430 PANTHER RNA BINDING PROTEIN 15 423 - -
Mupr5240g00006 430 CDD RRM3_CELF1-6 347 419 - -
Mupr5240g00006 430 FunFam RNA-binding protein BRN1 2 100 - -
Mupr5240g00006 430 MobiDBLite consensus disorder prediction 186 207 - -
Mupr5240g00006 430 CDD RRM1_2_CELF1-6_like 17 93 - -
Mupr5240g00006 430 CDD RRM1_2_CELF1-6_like 105 180 - -
Mupr5240g00006 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Mupr5240g00006 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Mupr5240g00006 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Mupr5240g00006 430 SUPERFAMILY RNA-binding domain, RBD 104 425 IPR035979 GO:0003676
Mupr5240g00006 430 Coils Coil 179 199 - -
Mupr5240g00006 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Mupr5240g00006 430 MobiDBLite consensus disorder prediction 312 338 - -
Mupr5240g00006 430 SMART rrm1_1 17 93 IPR000504 GO:0003723
Mupr5240g00006 430 SMART rrm1_1 105 180 IPR000504 GO:0003723
Mupr5240g00006 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Mupr5240g00006 430 Gene3D - 312 422 IPR012677 -
Mupr5240g00006 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Mupr5240g00006 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Mupr5240g00006 430 FunFam RNA-binding protein BRN1 isoform X1 101 193 - -
Mupr5240g00006 430 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Mupr5240g00006 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Mupr5240g00006 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Mupr5240g00006 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Mupr5240g00006 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Mupr5240g00006 430 Gene3D - 101 193 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5240g00006 Mupr-Chr5240 32025 36579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5240g00006 344 429 Eukaryotic Initiation Factors Gene Family AT2G23350 32.955 3.41e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5240g00006 K13207 - gmx:100807662 709.523