LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5239g00001	ATGTTTCATGAGAGCAGCGCGTCGCGGTGGCCGACTCAGCCGACTCAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGGGCTCTGCTCGTCGTGCCGGAGGACAGACCCGACCGCTGGGACAGGATCGCCGACCAGGTTCCTGGAAAGTCGCCGGCGGAGGTCAGGGAACACTACGACGCCCTCGTTCACGACGTCTTCGAGATCGACTCGGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGCGGCCGGAATTTCTACCTGGGACTCCGCTAATCAGATCTCATTCGGCTCCAAGCCTAGGCAAGCCGATAATGAAAGGAAGAAGGGCACGCCTTGGACTGAAGAAGAACACAGGCTGTTTCTAATTGGGCTTAGTAAATTTGGCAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTTACAAGAACACCAACTCAAGTGGCTAGTCATGCACAGAAATACTTTCTTCGTCAGAATTCGGTGAAGAAAGAGAGGAAAAGATCAAGCATCCATGACATAACCACAGTGGACAGTAACTCCGCGCCTGTGCCCATCGATCAGAATTGGGTTCCTCCTCCTGGTGCTTCACTGCAGCACTACCCATCAAATAATTTGCATGATCAAATGGGTGGATTTGGGTATTCAAATTATGGCTTTGAAATGAAAAGGAACCGAAGTAAATGA	696	0.5158	MFHESSASRWPTQPTQWTRYHDKLFERALLVVPEDRPDRWDRIADQVPGKSPAEVREHYDALVHDVFEIDSGRVEVPSYVDDSAAGISTWDSANQISFGSKPRQADNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSAPVPIDQNWVPPPGASLQHYPSNNLHDQMGGFGYSNYGFEMKRNRSK	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5239g00001	231	Gene3D	-	113	165	-	-
	Mupr5239g00001	231	FunFam	transcription factor MYB1R1	113	164	-	-
	Mupr5239g00001	231	ProSiteProfiles	Myb-like domain profile.	107	159	IPR001005	-
	Mupr5239g00001	231	SMART	sant	111	161	IPR001005	-
	Mupr5239g00001	231	SMART	sant	13	65	IPR001005	-
	Mupr5239g00001	231	Pfam	Myb-like DNA-binding domain	114	159	IPR001005	-
	Mupr5239g00001	231	CDD	SANT	114	159	IPR001005	-
	Mupr5239g00001	231	Gene3D	-	12	76	-	-
	Mupr5239g00001	231	ProSiteProfiles	SANT domain profile.	110	163	IPR017884	-
	Mupr5239g00001	231	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	13	222	IPR043363	-
	Mupr5239g00001	231	FunFam	Transcription factor SRM1	11	76	-	-
	Mupr5239g00001	231	CDD	SANT	17	59	IPR001005	-
	Mupr5239g00001	231	MobiDBLite	consensus disorder prediction	95	114	-	-
	Mupr5239g00001	231	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	110	162	IPR006447	GO:0003677
	Mupr5239g00001	231	SUPERFAMILY	Homeodomain-like	11	62	IPR009057	-
	Mupr5239g00001	231	ProSiteProfiles	Myb-like domain profile.	17	63	IPR001005	-
	Mupr5239g00001	231	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	107	163	IPR017930	-
	Mupr5239g00001	231	SUPERFAMILY	Homeodomain-like	109	164	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5239g00001	Mupr-Chr5239	8687	10735	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Mupr5239g00001		Myb_DNA-binding	4.1e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5239g00001	-		-	gmx:547481	411.764