Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5238g00005 ATGTCCTTCAAGTTCTGTGTTAATTTCGCTTCTGCCACTGACTCACCGTGCGCTTCATGTGACACAGATCGGAGCTCCGAAACGCGGTCGTTTCTCCGCGGAATAGACGTGAACTTGGCGCCGCCGCCTCCGCCTACGGCGGCGTGCGACGACGATAACGGGGTTTCGTCGCCGAACAGTACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGCAACGGAGACGAGAACGAGAGGGCGTCATGTTCGCGCGGCGGAAGCGACGACGATGACGGCGGCGGGTGCGGTGGAGATGGCGACGGCGACGGCGACACGTCGAGGAAGAAGCTGAGGTTGTCGAAGGAACAGGCCATGGTGCTGGAAGAAACTTTCAAGGAGCACAACACACTGAACCCGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGGCCAAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAGGTGGATTGTGAATACTTGAAGAGGTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTCCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTTTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTTGCCGTCTCATCCGCGTCCTCTTCCTCGTCGGCCACCACACCCTCTGCCCCACCTCCGGCTAATTGCAACCCGTTAGGCCATACCATCCAGCGGCCAGTGCCCGTCAACCCTTGGGCAGCAATGTCGATTCAACGCCGATTTGTGATGCCACATGCTGAGAAAAGGTGTGTCATTTGA 846 0.5532 MSFKFCVNFASATDSPCASCDTDRSSETRSFLRGIDVNLAPPPPPTAACDDDNGVSSPNSTISSISGKRSEREGNGDENERASCSRGGSDDDDGGGCGGDGDGDGDTSRKKLRLSKEQAMVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSATTPSAPPPANCNPLGHTIQRPVPVNPWAAMSIQRRFVMPHAEKRCVI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5238g00005 281 MobiDBLite consensus disorder prediction 31 110 - -
Mupr5238g00005 281 Pfam HD-ZIP protein N terminus 21 73 IPR006712 GO:0005634
Mupr5238g00005 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 238 - -
Mupr5238g00005 281 MobiDBLite consensus disorder prediction 228 251 - -
Mupr5238g00005 281 Coils Coil 171 201 - -
Mupr5238g00005 281 Gene3D - 113 163 - -
Mupr5238g00005 281 Pfam Homeodomain 109 163 IPR001356 GO:0003677
Mupr5238g00005 281 Pfam Homeobox associated leucine zipper 165 199 IPR003106 GO:0006355|GO:0043565
Mupr5238g00005 281 CDD homeodomain 109 166 IPR001356 GO:0003677
Mupr5238g00005 281 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Mupr5238g00005 281 MobiDBLite consensus disorder prediction 70 88 - -
Mupr5238g00005 281 SMART HOX_1 107 169 IPR001356 GO:0003677
Mupr5238g00005 281 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Mupr5238g00005 281 MobiDBLite consensus disorder prediction 52 69 - -
Mupr5238g00005 281 SUPERFAMILY Homeodomain-like 95 166 IPR009057 -
Mupr5238g00005 281 FunFam Homeobox-leucine zipper protein 18 97 170 - -
Mupr5238g00005 281 SMART halz 165 208 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5238g00005 Mupr-Chr5238 64017 67614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5238g00005 22 269 Homeobox Transcription Factor Family AT3G60390 65.134 2.60e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr5238g00005 Homeodomain 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5238g00005 K09338 - gmx:100798480 382.874