Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5171g00010 ATGGATCCTCCTCTCATCACCGACTCCACATTCTCCCCCGCCTACGCCCTCGCCGATATTTGGCCCCATTTCCCCCACCTCTCCTCCTCCACCACCACCACCACCGCCAACCAATCTAATAATGATTCTGGTAGCAATAAACGGATGAAGTTGGGAGGGTCTAGCGTTGAAAATGATGGTTCGAAAGCTGAGGCAGAAGCAAGTTCAGTGGGTGGTAACAAGTCAGGTGAACAAAACACTAAACCTTCTTGTGAGGCACCTAAGCAAGACTATATTCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGACAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGATGAGATAATCAATTACATCCAGTCGCTGCAGCGTCAGGTCGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAGTGAACGTGAACCCGACTAATGATGGGTTTCCTTCAAAAGATGCTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGAACACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGATTTTGAGAGAACAACATAA 672 0.4688 MDPPLITDSTFSPAYALADIWPHFPHLSSSTTTTTANQSNNDSGSNKRMKLGGSSVENDGSKAEAEASSVGGNKSGEQNTKPSCEAPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVNVNPTNDGFPSKDAGTQPFDIAGMVFGTQAARGYAQGSHPGWLHMQIGGDFERTT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5171g00010 223 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 197 IPR024097 GO:0006355
Mupr5171g00010 223 FunFam Basic helix-loop-helix transcription factor 97 169 - -
Mupr5171g00010 223 Coils Coil 147 167 - -
Mupr5171g00010 223 SMART finulus 106 156 IPR011598 GO:0046983
Mupr5171g00010 223 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983
Mupr5171g00010 223 MobiDBLite consensus disorder prediction 71 85 - -
Mupr5171g00010 223 MobiDBLite consensus disorder prediction 29 52 - -
Mupr5171g00010 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 169 IPR036638 GO:0046983
Mupr5171g00010 223 MobiDBLite consensus disorder prediction 29 88 - -
Mupr5171g00010 223 CDD bHLH_AtBPE_like 90 173 - -
Mupr5171g00010 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983
Mupr5171g00010 223 Gene3D - 97 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5171g00010 Mupr-Chr5171 47148 50370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5171g00010 42 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 61.413 5.27e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr5171g00010 HLH 7.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5171g00010 - - gmx:100306638 373.244