Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5154g00008 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATGTTTCGCCTAATATGCGTCCGATGTCTAACCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTACCATTAGAATCTTCGGCAATTTCGGCTCATGGTGTCAACATGGGTGCTCCTACTGGGGCACCTCCTGGTGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGGACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGTCATCCTGGAGCCTTGACACAAAGCCAGAAAAGGGGCAGAGGACGTCCACCTGGGACCGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATTAACATTGCAAGTGGAGAAGACATTGCCACAAAAATCATGGCATTTTCTCAGCAGGGACCGAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCAACTGTCACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGTTTTGAGATAGTGTGCCTGTCAGGCTCTTATTTGGTCACTGATAGTGGCGGCGCACGCAACCGAACTGGTGGACTGAGTGTATCCCTCGCCAGTCCTGATGGTCGTGTCATCGGTGGGGGAGTTGGGGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGCTTTCTATGGGGAGGATCAAAGACAAAGAACAAGAAAAAAGAAGGGTCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCAAGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAACCAAAACCTGGCCCCAACCTCATCTCTAACTCCTTGGTCAACATCACGTCCATTGGATATGCGTAATTCCCATGTCGACATTGACTTAATGCGTGGGGTAAAAGGCAAGAAAGAAAGA 1041 0.489 MDRGDQMALSGSYYMQQRGIPGSGAPPELHVSPNMRPMSNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNMGAPTGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSSHPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGARNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKEGSEGAEVAVESDHQGVHNPVALNSISPNQNLAPTSSLTPWSTSRPLDMRNSHVDIDLMRGVKGKKER 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5154g00008 347 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 1 47 - -
Mupr5154g00008 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
Mupr5154g00008 347 CDD DUF296 153 267 IPR005175 -
Mupr5154g00008 347 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Mupr5154g00008 347 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Mupr5154g00008 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 56 307 IPR039605 GO:0003680
Mupr5154g00008 347 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Mupr5154g00008 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Mupr5154g00008 347 Gene3D - 154 294 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 273 287 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 297 328 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 273 347 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 329 347 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 68 136 - -
Mupr5154g00008 347 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5154g00008 Mupr-Chr5154 42293 48327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5154g00008 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.448 2.22e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5154g00008 - - gmx:100802542 612.068