LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5152g00001	ATGAGTCCTAATGATGATGATGATGGTCCTGTGATGGTGAAGGAGGAGTTTCCTGGAGAAGGTGTGGTTGCTCCACAACCACTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTATGACATAGTCGATGATGTTTCCACCGATGAAATAGTTTCGTGGAGCAGAGGAAACAACAGCTTCGTGGTGTGGGATCCTCGGGCTTTCTCCATCACTCTTCTCCCCAGATTCTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACCTATGGGTTTAGAAAGGTAGACCCAGATAAGTGGGAGTTTGCCAATGAAGGGTTTGTTAGAGGACAAAGGCATCTATTGAAGAATATAAGGAGGAGGAAGAGCACTCATCAACCTCAGGCACCAAAAGAAGCTCTTGACCCTTGTGTTGAAGTGGGGAGGTTTGGAATAGATGGAGAAGTTGATGGGTTGAGGCGTGACAAGCAAGTTCTCATGGTGGAGCTAGTGAAGCTAAGACAACAACAGCAGAACACAAGAAATAGCATTCAATCAATGGAAAGTAGACTTAAGAAGAGTGAGAAGAAGCAGCAACAGATGACGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCTACAAAGGGAATGGAGGAAGGAGCTTGAGGAAGCTTTTGCCAACAAAAGAAGAAGACCTATTGATCAAGGGCCTAGTGTTAAACTTGAACAGGTTTCTGACATGGACCTTGTTACGAACATGGGGGAACAAAGTGGAAGCCAAAAGAACAGTGTGGAGGAGAAAGGAGCTGAAATTGAAAGTGGAAATGATGGCATGGAAGAAGTGCTCTGGGAAGAACTTTTGAATGAGGGTGAAGATCTACTAGGATTGGAAGATGATGATGAAGATATAACTGTTTTGGCTGAGGAGCTTGTATTGTAA	960	0.4458	MSPNDDDDGPVMVKEEFPGEGVVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPRAFSITLLPRFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFVRGQRHLLKNIRRRKSTHQPQAPKEALDPCVEVGRFGIDGEVDGLRRDKQVLMVELVKLRQQQQNTRNSIQSMESRLKKSEKKQQQMTKFLARAMQNPNFLQQLVLQREWRKELEEAFANKRRRPIDQGPSVKLEQVSDMDLVTNMGEQSGSQKNSVEEKGAEIESGNDGMEEVLWEELLNEGEDLLGLEDDDEDITVLAEELVL	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5152g00001	319	Gene3D	-	31	129	IPR036388	-
	Mupr5152g00001	319	Pfam	HSF-type DNA-binding	39	128	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	Coils	Coil	156	197	-	-
	Mupr5152g00001	319	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	25	263	IPR027725	-
	Mupr5152g00001	319	ProSitePatterns	HSF-type DNA-binding domain signature.	78	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	SUPERFAMILY	"Winged helix" DNA-binding domain	34	128	IPR036390	-
	Mupr5152g00001	319	FunFam	Heat shock transcription factor 1	32	129	-	-
	Mupr5152g00001	319	PRINTS	Heat shock factor (HSF) domain signature	77	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	PRINTS	Heat shock factor (HSF) domain signature	90	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	PRINTS	Heat shock factor (HSF) domain signature	39	62	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	MobiDBLite	consensus disorder prediction	260	283	-	-
	Mupr5152g00001	319	SMART	hsfneu3	35	128	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr5152g00001	319	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5152g00001	Mupr-Chr5152	4078	6951	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5152g00001	25	317	HSF	AT3G22830	53.429	6.32e-120	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr5152g00001		HSF_DNA-bind	4.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5152g00001	K09419		-	gmx:100806789	416.772