Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5139g00002 ATGACTAGAAAGAAAGTGAATCCTGCATACATAACAAATGACTCGAAGAGGAAGGCAACCTTAAGGAAAAGGAAGAAAGGTTTGATCAAGAAGATTGATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATATTGTATACTCCTCACAATCCTCAGCCAGAGGTTTGTCCATCTGACTGGGGAGTCCAAAGTGTTCTTTCCAAGTTTAGGGGAGTGTCTGAATTGGAACAAAGCAAAAAAAAGTTCAATCAAGAGAGCTTTTTGAGGCAGAGGATCGTGAAAGCCCAAGGGCAGCTGAAGAAATTGAAGAATGAAAATAGGAAGAAAGAGATGACCCTTCTCATGTTTCAATACTTCAATGATGGGAATATTTTTGACAAGGCCAACATGATTGATCTGAATGATCTGTCACACATGATTGACCAAATCTTGGAGGAAATAGGAAGAAAAAACAATATGAGCCAAACCCAAGAGGAAATACCAATTGTTGAAAATGGAGGAAAACCCATGATTCAAGGAGAGCAAGAATTTGTGACTCATGTCCAAGGCTTGGTGGACATCATTAATGGTGGTGGTGGGGATGAGATGTTAACATTGGGAGATGTTATAGAATCCATGAAGCATCAGTTAGCAACATGGAAAGGAAAGAGATTGTACCTAGGAGAGTCAAAGGATTTAGAATCAATGATAGTTGACCAATTGATGGGTTCACTTCAAGCATATGAGAAAGGTTCAAGAGAAGACATGATGAGTCTTTTGAGTAAGTCATAA 777 0.3887 MTRKKVNPAYITNDSKRKATLRKRKKGLIKKIDEINILCGIEACAILYTPHNPQPEVCPSDWGVQSVLSKFRGVSELEQSKKKFNQESFLRQRIVKAQGQLKKLKNENRKKEMTLLMFQYFNDGNIFDKANMIDLNDLSHMIDQILEEIGRKNNMSQTQEEIPIVENGGKPMIQGEQEFVTHVQGLVDIINGGGGDEMLTLGDVIESMKHQLATWKGKRLYLGESKDLESMIVDQLMGSLQAYEKGSREDMMSLLSKS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5139g00002 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mupr5139g00002 258 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr5139g00002 258 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Mupr5139g00002 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr5139g00002 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr5139g00002 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr5139g00002 258 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mupr5139g00002 258 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mupr5139g00002 258 PANTHER MADS BOX PROTEIN 3 150 - -
Mupr5139g00002 258 Coils Coil 87 114 - -
Mupr5139g00002 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr5139g00002 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5139g00002 Mupr-Chr5139 26032 30275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5139g00002 1 191 Type I MADS-box Gene Family AT5G48670 45.026 2.67e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr5139g00002 SRF-TF 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5139g00002 - - gmx:102664096 238.81