Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5139g00001 ATGACTAGAAAGAAGGTGGATCTTGCATACATAACCAATGACTCGAAGAGAAAGACAACGTTAAGGAAAAGGAAAACTGGGTCAAAAATCATTGGTGAAATCAGTGTCCTTTGTGGAGTTGAAGCGTGTGCTATAATTTATACTCCAAATAATCCTCATCCAGAGGTTTGGCCATCTAATTGGGGAGTCCAAAGTGTGCTTTCAAGGTTCAGGGGAGTATCTGAACTGGAACAAAGCAAAAAAATGTTGAGTCAAGAGAGCTTTATGAGGAAGAAGGTCATCAAAGCCCAAGAGCAGCTGAAGAAACTGAAGTATGAAAATAGGAAGAAAGAGATGACAATTCACATGTTTCACCACTTCAATGGTGGGAACATTTTTGACAATGTCAACATGATTGATCTGAATGATATCTCATACTTGATTTATCAAAAATTAGAGGAAATAAAAATGAATATGAATATGATCCAAGCCCAAGAGGTGACACAAGTTGTTGAAAATGGAGGAGAAATAATGACTCAAGGAGAGCAAGAACTTTTGAATCCTGTCCAAGGGCCCGAGACCAAATTGGATGACATGCAAGCACTGAATTGGTTTATGGATATCATCAATTTTGGTGGTGATGAGGATGAGATGTTTACCTTGGAAGATGTTAATGTTCAAAGCAAGGTTTCAAGAACTAGTCGCTCTAGTTTGAACCGCCCAATATCGCACCATCAGACTCAAGCAATGCATGGGCTATACTACTTGACACGTCGCTTGACTTCTATGTCGACCGTCCTGGTGATACTCGATTGGTCGTCGATCCACAGTGTTGTTGTCCCTACTGTTAAGAGTTTCGTTAAGTTACAGTCAATTGACCTAGAGATACCTGGTCGGCCAACTGGCTCATAG 891 0.404 MTRKKVDLAYITNDSKRKTTLRKRKTGSKIIGEISVLCGVEACAIIYTPNNPHPEVWPSNWGVQSVLSRFRGVSELEQSKKMLSQESFMRKKVIKAQEQLKKLKYENRKKEMTIHMFHHFNGGNIFDNVNMIDLNDISYLIYQKLEEIKMNMNMIQAQEVTQVVENGGEIMTQGEQELLNPVQGPETKLDDMQALNWFMDIINFGGDEDEMFTLEDVNVQSKVSRTSRSSLNRPISHHQTQAMHGLYYLTRRLTSMSTVLVILDWSSIHSVVVPTVKSFVKLQSIDLEIPGRPTGS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5139g00001 296 Coils Coil 93 113 - -
Mupr5139g00001 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mupr5139g00001 296 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr5139g00001 296 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mupr5139g00001 296 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Mupr5139g00001 296 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mupr5139g00001 296 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Mupr5139g00001 296 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5139g00001 Mupr-Chr5139 3504 5504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5139g00001 1 204 Type I MADS-box Gene Family AT5G48670 39.713 1.14e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr5139g00001 SRF-TF 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5139g00001 - - gmx:102664096 235.343