Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5126g00002 ATGGTTAGCCAAAGGCAGCGACTCGCTCAGAAGCGATACAAAGCGGAGCACCCCGAGCTGTTTCCGAAGCCCGAGCCCACGCCCCCCAAAGATCCCAACAAGAAGAAGAAGAAGAAAAATAACGCGTTCAAGCGCAAAAGGGCCGAGTCCAAGCCCGTGTCCAGAAAACACCCTCTCAGAGTCCCCGGCATGAAGCCCGGCGAGAGCTGTTTCATCTGCCGGGCCAAAGACCACATCGCCAAGTTCTGCCCCGAAAAGGCCGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGACGACGCGGTCATCGAGCGAAGAACTGCCCCGAGGTGCAAGATGGCGCCAACGATGCCAAGTGTTGCTATAATTGTGGGGAAACTGGTCACTCTCTCACACAATGTCCGCTCCCTCTTCAACAAGTGTTCATTGGTGATGCAGGAGGGACAAAGTTTGCTGAGTGCTTTGTCTGTAATCAACGTGGACACTTGAGTAAAAACTGTCCTCAAAATACTCATGGCATTTATCCAAAGGGTGGTTGCTGTAAAATATGTGGTGGAGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGAAGCAGAGGATCTGTTGCTGCTAATAGGCCTGTTGCAATGAGAACTGAAGTGAGACCCAGTGGTCAAGTTACCAAATTTTTCAGCGGGGATGATATTGAGGATGACTTCATGACAGATGACATGCATAATGGTGACAATAACAAGTCAGCGAAGTCAAAAGATGGTCATGTAATACCAAAGAAGAGGGGTCCTAAAGTTGTGAACTTTAACTAA 807 0.487 MVSQRQRLAQKRYKAEHPELFPKPEPTPPKDPNKKKKKKNNAFKRKRAESKPVSRKHPLRVPGMKPGESCFICRAKDHIAKFCPEKAEWEKNKICLRCRRRGHRAKNCPEVQDGANDAKCCYNCGETGHSLTQCPLPLQQVFIGDAGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKGSRGSVAANRPVAMRTEVRPSGQVTKFFSGDDIEDDFMTDDMHNGDNNKSAKSKDGHVIPKKRGPKVVNFN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5126g00002 268 Gene3D - 115 174 - -
Mupr5126g00002 268 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SMART c2hcfinal6 153 169 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SUPERFAMILY Retrovirus zinc finger-like domains 118 139 IPR036875 GO:0003676|GO:0008270
Mupr5126g00002 268 SUPERFAMILY Retrovirus zinc finger-like domains 146 197 IPR036875 GO:0003676|GO:0008270
Mupr5126g00002 268 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 MobiDBLite consensus disorder prediction 9 32 - -
Mupr5126g00002 268 FunFam Zinc finger CCHC-type-containing 9 151 202 - -
Mupr5126g00002 268 MobiDBLite consensus disorder prediction 237 259 - -
Mupr5126g00002 268 ProSiteProfiles Zinc finger CCHC-type profile. 154 169 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 MobiDBLite consensus disorder prediction 33 53 - -
Mupr5126g00002 268 MobiDBLite consensus disorder prediction 235 268 - -
Mupr5126g00002 268 Pfam Zinc knuckle 154 169 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 Pfam Zinc knuckle 120 135 IPR001878 GO:0003676|GO:0008270
Mupr5126g00002 268 SUPERFAMILY Retrovirus zinc finger-like domains 63 111 IPR036875 GO:0003676|GO:0008270
Mupr5126g00002 268 Gene3D - 65 114 - -
Mupr5126g00002 268 MobiDBLite consensus disorder prediction 1 62 - -
Mupr5126g00002 268 PANTHER OS04G0555800 PROTEIN 1 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5126g00002 95 197 C2H2 Transcription Factor Family AT5G20220 29.310 3.27e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5126g00002 - - gmx:121174300 420.239