Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5096g00005 AAACCTCACGCGACGGTCTCGCTCGCTCGCTCGGGCAAATATGGAATACCTTCCGGCTTAAACGATCCATCCCAACAGCACCCACATGATTGCGGGACCCAAAAGCAAAGATCGGTATTCTCGCTTCTATCTTTATACATGACGGAAACGGAGGCTTCTCGGGCGCTCCGGAGCCTGACCCTCACCGCCACCGAAATCTCCAACCTCTCCGCCTTCAAGCCCGTCATCAAGACCCAATGCCGCGAACTCAGTCGCCGAATAAGCTTCCTCACTCCCCTCTTCCACGAATTGGAGGACGACGTCGTCTCCAGCCCCGCGCTTCCCTGCCACGCGCTCGCGTCGCTCGAAGACGCTCTCTTCCGCGCCAAGGAGCTGCTCCTATTCGCCACCCGCGCAAGCCAGATACTCGATAGGGAGCAAGTTAAGCAAAATTTCGTCGATGTTGCTGCTCATTTTGAACATGCTATAAGCAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATCAAGGAGCAGGTGAATAATATTTTGAAGGACTTTTTATTTTTTATTTTTTATCGAGAACTTGATACTTCTACACCAATGAGAATGTTGCGTGTTGCACTTGTGACCACTCAGTTTAGAAGAACCAAAGAGCTGTTTGATCCACCGGGTCTTCAGCTTTATGAGCACCTGTTGTCTGTTTGCAACCAGAGCTATGATGTGAATACTGAAACTGCTGAACTACATTTGATCTGTGAAAAGCTACAATTTCTCAATGTGGATGACATCAAGCAAGAGACACTCGCTCTACAAAAGATGGTTGTAGACAAGGATGACCATTCTCAGAAAAGCATAGGGGATATGTCATTAGTAGTGCTGAAAAAAATCCAAGATTTCTTGGTGTTGGAATCTGGAAACAATATTGTGTCACCAAGGGAGGACTTCTCTCGTCATACTGATGATCCATATGTGAAACTATCTCCGCAATCACTGGTTATACCCGATGAGTTTCGCTGCCCAATATCTCTGGAGCTAATGAAAGATCCTGTTATCGTTTGCACAGGGCAGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACATGTCCCAAGACTCAACAGATTCTTTCCAGCTCCATCCTCGTACCCAACCATGCTTTATACAGCCTGATATCAAGTTGGTGTGAGGAAAATGGAGTGGAGCCACCTAAAAGGTTACGAAATTTATGGCTCTGTAAGACATCAGATGGCTCAGCTGAATTAATAGATCTAGATATCTTAGTGAGCAAACTTTCTTCCAGTGATATTGAGGATCGACGATATGCAGCAGGGGAGATCCGACTTCTTGCCAAGAATAATGGTCATAATCGAATGCTGATTGGTGAAGCTGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCCGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTTTGAACTTGTCTATCTATGCGGATAATAAAGAGCGCATCATGGCTTCTGAGGCCGTGCCAGGCATCCTTTACGTGCTAGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGCGATGGGTGAGAACAGAGTGGCAATTGGTGCATCTGGAGCAATCGAAGCATTAGTTACTCTATTTTGCGAGGGAAGTCAAAGAGGTAAGGTGGATGCCGCAAAAGCACTATTCAATCTGTGTTTATCTCAAGGGAACAAAGGACGGGCAATTAGGGCTGGTATTGTACCAAAGTTGATGGAAATGCTAACAGAACCCGATGGGGAGATGAGGGACGAGGCATTGGCAATAATGGCTGTAGTAGTTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTATGAATTCTGTGTCCACTTTGGTGGAATTAATCAGTAATGGGTCTCCTAGGAATAAAGAGAATGCAACTTCAGTGTTGGTGCTCCTCTGTAGTGGAGATCCTCTACATTTGTCAATTGTCAGTTCACTTGGGGTGATCAATCCTCTCTTGTACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGAAAAGCTACCAAGCTTCTTGGGATGATAGGAAACCATTGTGAATATACCAGGAAAACTGTAGAACTAGAAATTTGC 2139 0.4591 KPHATVSLARSGKYGIPSGLNDPSQQHPHDCGTQKQRSVFSLLSLYMTETEASRALRSLTLTATEISNLSAFKPVIKTQCRELSRRISFLTPLFHELEDDVVSSPALPCHALASLEDALFRAKELLLFATRASQILDREQVKQNFVDVAAHFEHAISKISFDELDVSEEIKEQVNNILKDFLFFIFYRELDTSTPMRMLRVALVTTQFRRTKELFDPPGLQLYEHLLSVCNQSYDVNTETAELHLICEKLQFLNVDDIKQETLALQKMVVDKDDHSQKSIGDMSLVVLKKIQDFLVLESGNNIVSPREDFSRHTDDPYVKLSPQSLVIPDEFRCPISLELMKDPVIVCTGQTYERSCIKKWLEAGHGTCPKTQQILSSSILVPNHALYSLISSWCEENGVEPPKRLRNLWLCKTSDGSAELIDLDILVSKLSSSDIEDRRYAAGEIRLLAKNNGHNRMLIGEAGAIPHLVDLLYAPDAGTQEHAVTALLNLSIYADNKERIMASEAVPGILYVLENGSMEARENAAATFFSLSAMGENRVAIGASGAIEALVTLFCEGSQRGKVDAAKALFNLCLSQGNKGRAIRAGIVPKLMEMLTEPDGEMRDEALAIMAVVVSHPDGKAAIGSMNSVSTLVELISNGSPRNKENATSVLVLLCSGDPLHLSIVSSLGVINPLLYLAENGSERGKRKATKLLGMIGNHCEYTRKTVELEIC 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5096g00005 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Mupr5096g00005 713 PANTHER U BOX DOMAIN-CONTAINING 77 695 - -
Mupr5096g00005 713 SUPERFAMILY RING/U-box 327 404 - -
Mupr5096g00005 713 Pfam Armadillo/beta-catenin-like repeat 455 492 IPR000225 GO:0005515
Mupr5096g00005 713 Gene3D - 55 162 IPR036537 GO:0007166
Mupr5096g00005 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 401 IPR013083 -
Mupr5096g00005 713 Pfam U-box domain 328 398 IPR003613 GO:0004842|GO:0016567
Mupr5096g00005 713 ProSiteProfiles U-box domain profile. 327 401 IPR003613 GO:0004842|GO:0016567
Mupr5096g00005 713 SMART Ubox_2 331 394 IPR003613 GO:0004842|GO:0016567
Mupr5096g00005 713 Gene3D - 565 711 IPR011989 -
Mupr5096g00005 713 SMART arm_5 617 657 IPR000225 GO:0005515
Mupr5096g00005 713 SMART arm_5 534 575 IPR000225 GO:0005515
Mupr5096g00005 713 SMART arm_5 576 616 IPR000225 GO:0005515
Mupr5096g00005 713 SMART arm_5 452 493 IPR000225 GO:0005515
Mupr5096g00005 713 FunFam RING-type E3 ubiquitin transferase 412 703 - -
Mupr5096g00005 713 Gene3D - 404 560 IPR011989 -
Mupr5096g00005 713 FunFam RING-type E3 ubiquitin transferase 327 401 - -
Mupr5096g00005 713 CDD RING-Ubox_PUB 329 381 IPR045210 -
Mupr5096g00005 713 SUPERFAMILY ARM repeat 423 699 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5096g00005 Mupr-Chr5096 8413 16477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5096g00005 49 707 U-box Gene Family AT3G46510 47.598 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5096g00005 - - tpra:123888033 750.74