LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5083g00005	ATGGGAAGCAGTAGCAGGAAGAAGCAGCAGCAAGATCTGGAGTTAGAGAAAGTTCGCTTAATCAGCTTAGCCCTCGATTTCGGCTTCGACGAATCTTCCGCCAACAAATGCCTCGACCGTCTTATCGCTCTCTACGGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGCCTCTCTGGCCGAGTCTATGCAGGCCACCGAGGATTGGGACGACCTGCAGGAAATGGAATCGCAAGCGTGCGGAACCTTGACGCACGTGCTCGACGAAACTGTTTCCACGTGTGCCGATGCGGATAATGGTCACGCTTCGAGAAGCTTCGTTAACATTGTTGACGACTCGCCTCAACCGCAGAGACGCAAACGCCGGACTAATGTAGTGGAGTTGGATTCAAGTGACGATGAGGATATGCACTGTAGTTTTTCAAGGGAGAAAACTATGGGTTACAGAAGTGGCATCACTGAAGGCTCGGTTTCATCAACTTTCAGCAAAATGCAATCCTCCTTTGCATCAAAGGATAAAAGTAGTACTCTCACTTATGAAGAATTGCAAGCACTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCAACGCTTCAACCAGGTGTTACTGTTGTTGTATCTCCATTACTTTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACTGCTTCCCAGGCTACAGCTGTCCTCCAAGAGCTAAGAAAAGGCAAACCATCATGCAAACTCTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTTGAGATTCTAAAATGCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGACCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTAAGGACATATTAAATGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTAAATTATGAAGTGATTGGTAAGACAAAGGAGCCACTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCCAAATTTTTGAACGAGAAATGTAGGATCAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTAGCTGTTCAAAAGAAATGGCATGAGGGGGAGGTCCATATTGTCTGCGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGGGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGAAATGGCTCAAGCCAAAAATATGCAACAGTACTGTGAAATGAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGAGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGCACTATGA	1830	0.4366	MGSSSRKKQQQDLELEKVRLISLALDFGFDESSANKCLDRLIALYGEDGRDFITVEHCGDDFLASLAESMQATEDWDDLQEMESQACGTLTHVLDETVSTCADADNGHASRSFVNIVDDSPQPQRRKRRTNVVELDSSDDEDMHCSFSREKTMGYRSGITEGSVSSTFSKMQSSFASKDKSSTLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKGKPSCKLLYVTPERIAGNQSFLEILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPDVPVMALTATATHAVRKDILNALRIPHALVLERSFDRPNLNYEVIGKTKEPLKQLGQLLIDRFKNQCGIVYCLSKSECVEVSKFLNEKCRIKTVYYHAGLAARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTEMAQAKNMQQYCEMKVECRRQTLLKHFGESFDRKACKYGSSPCDNCLKTAL	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5083g00005	609	Pfam	DEAD/DEAH box helicase	210	379	IPR011545	GO:0003676\|GO:0005524
	Mupr5083g00005	609	Pfam	Helicase conserved C-terminal domain	416	523	IPR001650	-
	Mupr5083g00005	609	SMART	helicmild6	442	524	IPR001650	-
	Mupr5083g00005	609	Gene3D	-	400	608	IPR027417	-
	Mupr5083g00005	609	SMART	ultradead3	204	408	IPR014001	-
	Mupr5083g00005	609	NCBIfam	RecQ family ATP-dependent DNA helicase	202	607	IPR004589	GO:0004386\|GO:0006310
	Mupr5083g00005	609	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	247	545	IPR027417	-
	Mupr5083g00005	609	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	190	605	-	-
	Mupr5083g00005	609	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	216	392	IPR014001	-
	Mupr5083g00005	609	FunFam	ATP-dependent DNA helicase	400	607	-	-
	Mupr5083g00005	609	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	331	340	IPR002464	-
	Mupr5083g00005	609	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	417	564	IPR001650	-
	Mupr5083g00005	609	Pfam	RecQ zinc-binding	536	605	IPR032284	-
	Mupr5083g00005	609	CDD	DEXHc_RecQ	202	399	-	-
	Mupr5083g00005	609	FunFam	ATP-dependent DNA helicase	189	399	-	-
	Mupr5083g00005	609	CDD	SF2_C_RecQ	400	533	-	-
	Mupr5083g00005	609	Gene3D	-	166	399	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5083g00005	Mupr-Chr5083	29007	34722	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5083g00005	333	522	Eukaryotic Initiation Factors Gene Family	AT5G11170	27.979	1.18e-09	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5083g00005	K10899		-	gmx:100806070	1115.14