Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5042g00005 ATGGGTTCGGCCTCTAGTCGACTTGGGTCTCGCCCTTCTACTCCTACTCCCAGGGTCAACCGCTTCAGACTATCCTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTTATCAGATGGAAGAACATTCATCTGATCTTCAGGTTGATTCAGCAAGAGATTTTGTTGGTGAAATTCAGAAAGTCACTGAGGAACCATCTTTATCATGTACAGAAGCAAGAATTAGTTGCAGTCCCCATGCTGAAACTGCAACCTCATCTGATATGAGAAATGAGTTCCATGGGAATACTAGTGTTGAAGGTTCTTCTAGAAACGTTGCAGCAAATAGTCAGAGAAATTGCTTGTCTGAACATGAGGAGCTAGTCTCTCCTTATCATGTAAGTGCTGGTCTTAGTGGCCGTGAATCATATAGGGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTCAACAATCCAGTAGTTAGTGGTGGCTCTCAAGTCTCTCATGAGACAATGCATCCAAGAAGTTCAACCCCTCAAGAGCATGGGAATTTTGATTCTGGTGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCATCCAACCCTGTTGCTCAAGTTTCCAACTTAACAGCAACTTCTCAAGTGCCAGAAGATGAACCTCGCCGCGAGACAATACCTTCAGGTTTAGGTATCCTTGTGTCCAACCGGGAAAGAGGGCTGGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCTAATGATCAGGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGAGGTTCTGATGATCCTGGATCTCAAGATAGATGGCTAGTTGATTTTGGTGGTGATTTGTCAACTGATGGGGTTGGAGGTGCTTCTGGATATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGCGGTGGCTTTGACGAGATTGGTCGGTGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGTTCATGTGAGTCTTCCCCAATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATAGGCAACCTGGATCGCTGTCTCTATCCATGGTTTCACTCCCTGCACCTGAATCAATTGTTGATTCCTTCCCTCTGAAATCTCACAAAAAGGTTGATGTGGCTGATGGAGACAATGATGCTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGAGACCAAATACGAGTTCTTCCTTGCTTCCACGAATATCACATGTCATGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTGTGTCCTCTGTGTCGTGGCAATGTTTGTGGAGGGTTCACAGACACAGAATCTTCTGCTCACTCAGAAGTGCAGTCTCATTGA 1623 0.4418 MGSASSRLGSRPSTPTPRVNRFRLSSLLCGTSTSRSIYQMEEHSSDLQVDSARDFVGEIQKVTEEPSLSCTEARISCSPHAETATSSDMRNEFHGNTSVEGSSRNVAANSQRNCLSEHEELVSPYHVSAGLSGRESYRDSSNTASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVVSGGSQVSHETMHPRSSTPQEHGNFDSGEISVENHTSAFISIQNSSNPVAQVSNLTATSQVPEDEPRRETIPSGLGILVSNRERGLGNDSVLQVDVVTISSNILSGSNADANDQDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSAGGSDDPGSQDRWLVDFGGDLSTDGVGGASGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGDNDAEQCYICLAEYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTDTESSAHSEVQSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5042g00005 540 Pfam Ring finger domain 476 519 IPR001841 -
Mupr5042g00005 540 SMART ring_2 477 518 IPR001841 -
Mupr5042g00005 540 FunFam Putative RING zinc finger domain superfamily protein 444 524 - -
Mupr5042g00005 540 MobiDBLite consensus disorder prediction 134 204 - -
Mupr5042g00005 540 MobiDBLite consensus disorder prediction 131 204 - -
Mupr5042g00005 540 ProSiteProfiles Zinc finger RING-type profile. 477 519 IPR001841 -
Mupr5042g00005 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Mupr5042g00005 540 MobiDBLite consensus disorder prediction 229 250 - -
Mupr5042g00005 540 SUPERFAMILY RING/U-box 457 522 - -
Mupr5042g00005 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 523 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5042g00005 Mupr-Chr5042 23978 28275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5042g00005 347 523 C3H Transcription Factor Family AT5G45290 46.392 2.28e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5042g00005 - - gmx:100783604 932.939