Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5032g00003 AGTGATATTAGGAAGTGGTTCATGAAATCGCATGACAAGGGCAACAATGCCGGTGCCTCCAAGCCTTCTAATCAAGCCAACCCTTCTAATCAAGCCAAGCCTTCTTCTGATAAACCCCAGCCAGAGAAAACGGTGCCTGGTGGTCAAGAAAGTTCAGGCAGGAGGATAACTAGCAAATATTTTAATACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAAAGCTGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACAGTGAGGAAATGGCGGAGCCAAAGAAAATTGATGAAGATGATGGAGATGACTCTGTCTTGCCCACTAATAAAAAGAAGTTAGTTGACACCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCGGAAATCTGCAGATTTGGAAGAAGGTGATGAAGATGATGATAAAGATGCTGTGTCTGCTGCTAAATCGGGTGGAAGGGGTGGTGGTGGAAGAGGAGCACCGGGGCGATCAGCTGGTGGGAGAGGTAGAGGGGGTGGCAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGGGAAAAGGAAGTCCCTGAAGGCGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAATCTGAAAAAGCCAAAGAGCTAGGAACTTCATTCCTTACAGAGGATGGATTGTTTGATAAGATTCGTGCATCAAAACCTGCAAAAGCTCCTTCACAAGACAAGAAGCCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCAAAATCACAAGTTAAGGTCCCTCTATCTTCACCCTCACCTTCTAAGCAGGCCAAGCCAAAGAATGCTACTACTGTTCAGTCTTCTTTGATGTGGACGGAGAAACATCGGCCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGTAATTGGTTGAAAGCTTGGCATGAGCAATTTTTGGACACTGGTAACAAAAAACAAGGAAAAAAGCCAAGTGACTCTGGTTCCAAAAAAGCTGTCTTGTTATGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGATCTGTCAGGAGCTTGGTTTCCAAGCCGTAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGGAGCAATGCAAATTCTATAAAGGAACTTGTAACCAATGAGTCCCTTGGTGCTAAAATGAATTGGTTGGTCTTTCTTCATTATAATATGTCAAAGCATTCCAAATCTGTTCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTGATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATCGCACTTGAGGAACTATCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACACTTTATGAGCCTCTCCATGTCAGTTATCAACTACGATGATATTAGGAAGCGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGCAAGTTGAGAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGGTAAGGATGACGGTGGCATAAAACGGATGAACCTGATTGCCCGTGCTGCTGAGTCTCTTGCTGATGGGGATATAGTGAATGTACAAATTCGCAGATATCGACAGTGGCAACTCTCTCAAACTAGTTCTGTTGCATCAAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAACACTTGAACAGGGAGAACGGAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGATGATCTGCATGTTCACATTCTCGGTTCTCGTGAATCTAGTTCAGGAAGGGATGCCATTCGCATGGAATACCTTACTCTTCTTCTTAAACAATTGACAGAACCCCTGCGAACCCTGCCTAAGGCTGAAGCGGTTCAGCAAGTTGTGGAATTCATGAATACATACTCCATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAGTTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAATTCTCGGGTGATTCGAGTTGCGGATCTAATCACTCTTCCTGGAGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTTGAACCAGCTGATGAAGAAGTGGAAAAAGGTGAAGGTGACACCATGGACGAGAGTGAAGAAGAGAACACATCTGATACAGAAGAGTTGGGAACCACCAAGGGGGAGAAGCTGCGGTCAGAACTTCAAGGTTGGAATTCAAAGGCCACGCGAGTAGAGTTGGAACTGAAGGGAACTGGAAATTCAAGTTCCAAGAAGCCAGCCGGTGGTAGAGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGTTGCTCAAGCTCCAAAGACTACTGCAAAAAGAAAAAGGATCCAAATTTGCTTGTGGTATTCCTAG 2913 0.4339 SDIRKWFMKSHDKGNNAGASKPSNQANPSNQAKPSSDKPQPEKTVPGGQESSGRRITSKYFNTNKQKVKDEKEKLELPAKRKNMKDSEEMAEPKKIDEDDGDDSVLPTNKKKLVDTTPTKKLKSGSGRGIPRKSADLEEGDEDDDKDAVSAAKSGGRGGGGRGAPGRSAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDKIRASKPAKAPSQDKKPVNKAVAVASQSKVSPKSQVKVPLSSPSPSKQAKPKNATTVQSSLMWTEKHRPKDPKDIIGNQSLVSQLRNWLKAWHEQFLDTGNKKQGKKPSDSGSKKAVLLCGTPGIGKTTSAKLICQELGFQAVEVNASDSRGKADSKIEKGISGSNANSIKELVTNESLGAKMNWLVFLHYNMSKHSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKLMDVAKAEGLQVNEIALEELSERVNGDMRMALNQLHFMSLSMSVINYDDIRKRFLTNAKDEDISPFTAVDKLFGFNAGKLRMDERINLSMSDPDLVPLIIQENYINYRPSLAGKDDGGIKRMNLIARAAESLADGDIVNVQIRRYRQWQLSQTSSVASSIIPASLLHGQRETLEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILGSRESSSGRDAIRMEYLTLLLKQLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSNSRVIRVADLITLPGVKKAPKKRIAAILEPADEEVEKGEGDTMDESEEENTSDTEELGTTKGEKLRSELQGWNSKATRVELELKGTGNSSSKKPAGGRGRGKGASASGQKVAQAPKTTAKRKRIQICLWYS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5032g00003 970 PIRSF RFC1 1 169 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Mupr5032g00003 970 PIRSF RFC1 163 935 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Mupr5032g00003 970 Pfam BRCA1 C Terminus (BRCT) domain 203 276 IPR001357 -
Mupr5032g00003 970 SMART BRCT_7 203 281 IPR001357 -
Mupr5032g00003 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 594 IPR027417 -
Mupr5032g00003 970 Gene3D - 534 604 - -
Mupr5032g00003 970 SUPERFAMILY BRCT domain 201 282 IPR036420 -
Mupr5032g00003 970 CDD BRCT_RFC1 201 279 - -
Mupr5032g00003 970 FunFam Replication factor C subunit 1 534 605 - -
Mupr5032g00003 970 CDD HLD_clamp_RFC 534 594 - -
Mupr5032g00003 970 Gene3D BRCT domain 178 280 IPR036420 -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 282 351 - -
Mupr5032g00003 970 FunFam Replication factor C subunit 1 606 715 - -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 64 118 - -
Mupr5032g00003 970 Gene3D - 606 716 - -
Mupr5032g00003 970 FunFam Replication factor C subunit 1 337 533 - -
Mupr5032g00003 970 SMART AAA_5 389 535 IPR003593 GO:0016887
Mupr5032g00003 970 ProSiteProfiles BRCT domain profile. 201 282 IPR001357 -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 300 339 - -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 866 961 - -
Mupr5032g00003 970 FunFam Replication factor C subunit 1 177 280 - -
Mupr5032g00003 970 Gene3D - 337 533 IPR027417 -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 45 63 - -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 873 892 - -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 1 204 - -
Mupr5032g00003 970 SUPERFAMILY post-AAA+ oligomerization domain-like 605 749 IPR008921 GO:0003677|GO:0006260
Mupr5032g00003 970 Pfam Replication factor RFC1 C terminal domain 675 836 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Mupr5032g00003 970 CDD AAA 378 497 - -
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 16 38 - -
Mupr5032g00003 970 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 12 931 - -
Mupr5032g00003 970 Pfam ATPase family associated with various cellular activities (AAA) 393 500 IPR003959 GO:0005524|GO:0016887
Mupr5032g00003 970 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5032g00003 Mupr-Chr5032 13593 24063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5032g00003 1 916 Core DNA Replication Machinery Family AT5G22010 67.314 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5032g00003 K10754 - gmx:100790070 1524.22