Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5030g00004 ATGGCGTCCGCAAAGCGATGCCACTACGAAGTGCTCGGTGTTCCCATAGACTGCGGTGCCGACGAGATCCGGTCGGCGTACCGGCGGCTGGCCCTTCAGCGGCACCCGGACAAGCTGGTCTCATCGGGTCTCTCCCAGGCTGACGCAACCGCGCAGTTTCAGGAGCTCCAACATGCTTACGAAGTTCTCTCCGACCCGAAGGAACGCGCCTGGTACGATTCCCACCGTTCCAGGATCCTTTTCTCCGATTCCGACTCGCTCTCCAACTCGGTCGTCCCCGATATCTTCTCTTTCTTCTCCAACACCGTCTACTCCGGCTACTCCGACGCCGGAAAGGGATTCTACAAAGTCTACTCCGACGTCTTCGACAAAATCCACGCCAACGAGGTTAGTTACGCGAAGAAATTGGGCCTTGGCGTCGACGCGGTCAGACAGGCTCCTGTTATGGGGAACTTGAATTGCCCCTACGCGCAGGTTACGGCTTTTTATGGTTACTGGTTAGGGTTTAGTACGGTGATGGATTTTTGTTGGGTTGATGGGTACGATGTTATGGCGGGTCCGAATCGGAAGTCGCGGCGGCATATGGAGGAGGAGAATAATAAGATGAGGAGGAAGGCGAGGAGGGAGTATAATGATACTGTTAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGTTGAAGAGGAGTGTGGAGATGGAGAAGAAGAAGGAGGAGGAGAGGGAGAGGAAGATGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCTGTGGCTTATGAGGAGCCTGAGTGGGCTAAGGTTGAGGAGGTGGAGGATGATTATGATGAATGGCTTGATGAGGAGAAGAAGAATGAGAAGGAGTTCTACTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCACGAGCAGTCCAAGAAACATAAGGAGAGGGTTGCCGAGTTTAGGGATTCAATTGGCCATGAAGACGATTTGGAAGAAGAAGAAGAGGAAGGAAAGGAGAGGTCGGACTGTGAGGAAGATGGGATTGGGGTGAATGATGATCCTGATTGTGGGGTTGGTGATTTGGAGGAGAGGATTAGAGATGGTCTCAATGTTGAAGAGGGGGAGACTAGAAATGTAAGTAATGATGATGATGATGGTGATGGTGATGAGTTTTTTGATGCCTCGTATGTGAAGGAGCGGGAAGAGCATACTTTTGGCGATGATTGCAATGAAGAAGAGGATGAAAATGGCGTTCTGGAAGCAATGGTGGCAGGGCACAAGAACAGGAAACCAATTGCTTCAACACACAAACCCAAGACTTCAGTGGTTCCCTCTCAAATTGAAAATGAGAACGATGGGATTGACTCTATGGAATATAACAACCGAACGACCACAAGGAAGAAACGCAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGTGAAGAATCTGATGGGTCTGCTGCCAGTGGCAATGGTGAGAATGCAAACGGTAATGGAAGTGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTGTGAAAAATGAGGATAATGGTATGGCGAATGGGCAGGTTGGGAGAGATAAGAAGGGTTTTAATCAACCGGCTGATAAAAAAGGAGCTTCCAAGGACACAAAAACCAAAGCTAAAATTTCATCCAAAGGAAGAAAAGCGAAGGGGACATCAAAGAATGTTGGCAATATTTGTGAGGCGTGTGGAGAGGAGTTTGAGTCAAGGAATAGATTACATAAACATCTTGGCGATTCTGGGCATGCAACAATTAAAGGTCGATAG 1809 0.4854 MASAKRCHYEVLGVPIDCGADEIRSAYRRLALQRHPDKLVSSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSRILFSDSDSLSNSVVPDIFSFFSNTVYSGYSDAGKGFYKVYSDVFDKIHANEVSYAKKLGLGVDAVRQAPVMGNLNCPYAQVTAFYGYWLGFSTVMDFCWVDGYDVMAGPNRKSRRHMEEENNKMRRKARREYNDTVRRLGDFVKKRDKRVIDMKLKRSVEMEKKKEEERERKMRLEKERKERAVAYEEPEWAKVEEVEDDYDEWLDEEKKNEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGHEDDLEEEEEEGKERSDCEEDGIGVNDDPDCGVGDLEERIRDGLNVEEGETRNVSNDDDDGDGDEFFDASYVKEREEHTFGDDCNEEEDENGVLEAMVAGHKNRKPIASTHKPKTSVVPSQIENENDGIDSMEYNNRTTTRKKRRAKKEKGRKNCEESDGSAASGNGENANGNGSDNSHAEESSSQHFVKNEDNGMANGQVGRDKKGFNQPADKKGASKDTKTKAKISSKGRKAKGTSKNVGNICEACGEEFESRNRLHKHLGDSGHATIKGR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5030g00004 602 Pfam DnaJ domain 8 73 IPR001623 -
Mupr5030g00004 602 ProSitePatterns Zinc finger C2H2 type domain signature. 574 596 IPR013087 -
Mupr5030g00004 602 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 395 409 - -
Mupr5030g00004 602 SMART dnaj_3 6 68 IPR001623 -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 330 345 - -
Mupr5030g00004 602 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Mupr5030g00004 602 Coils Coil 272 292 - -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 536 556 - -
Mupr5030g00004 602 Pfam Zinc-finger double-stranded RNA-binding 293 318 IPR022755 -
Mupr5030g00004 602 ProSitePatterns Zinc finger C2H2 type domain signature. 295 317 IPR013087 -
Mupr5030g00004 602 Coils Coil 192 212 - -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 442 464 - -
Mupr5030g00004 602 SMART c2h2final6 572 596 IPR013087 -
Mupr5030g00004 602 SMART c2h2final6 293 317 IPR013087 -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 305 569 - -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 361 381 - -
Mupr5030g00004 602 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Mupr5030g00004 602 SUPERFAMILY beta-beta-alpha zinc fingers 280 329 IPR036236 -
Mupr5030g00004 602 PRINTS DnaJ domain signature 9 27 IPR001623 -
Mupr5030g00004 602 PRINTS DnaJ domain signature 48 68 IPR001623 -
Mupr5030g00004 602 PRINTS DnaJ domain signature 27 42 IPR001623 -
Mupr5030g00004 602 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 602 IPR044648 -
Mupr5030g00004 602 Coils Coil 234 261 - -
Mupr5030g00004 602 Gene3D DnaJ domain 1 90 IPR036869 -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 305 329 - -
Mupr5030g00004 602 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Mupr5030g00004 602 CDD DnaJ 7 65 IPR001623 -
Mupr5030g00004 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 572 601 IPR013087 -
Mupr5030g00004 602 MobiDBLite consensus disorder prediction 488 511 - -
Mupr5030g00004 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 322 IPR013087 -
Mupr5030g00004 602 Gene3D Classic Zinc Finger 280 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5030g00004 Mupr-Chr5030 18179 20916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5030g00004 3 602 C2H2 Transcription Factor Family AT1G74250 52.019 1.22e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr5030g00004 DnaJ 1.8e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5030g00004 K09506 - gmx:100788305 889.797