Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5027g00013 ATGGCAGAACCATCCACCGCCGCCCCTCCGCCGCCGGTGACCAAGAGCTGGGCCGACGAAGCGGAGGAAGAAACCAACGCCTCCGCCACTGAGCCAGAAACATCCTCCGTCAACGTCGACGCATTAACCATCGACGAAAACAAAAACCAGCCGAAGTTGTTAGACGATCCCGATGACTCCAACATCCAAGCGGTTACCTCCGGTGACACGCCGTACACGTCGGCGGCGACGTTCGAGGACCTGAACCTATCGCCGGAGTTGCTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTGAACCCGCCGCACCGGGACTTGATCGCGCAGGCGCACAACGGCTCCGGCAAGACGACGTGCTTTGTGCTTGGGATGCTCAGCCGCGTGGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGCATTTGCCCCACACGGGAGCTGGCCATTCAAAACACCGAGGTGCTCCGCAAGATGGGGAAGTACACCGGGATTGCCTCCGAGTGTGCCGTGCCGATGGATAGTAGGGATGCTCTTCCAATCGCGAAAAGGGCGCCGATTATGGCACAGGTGGTGATTGGGACACCCGGCACCATTAAGAAGTGGATGAGCTTCAAGAAGCTTGGGGCTACCAGGTTGAAGATTCTTGTTTTCGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAGAGTCAATTCCAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTTGTTTCAAGGACAGTTAAGAATGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCATTAGATGCAGTGAAGCAATATAAAGTGCATTGTCCTGATGAACTTGCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGCGCACAAGAAATAGTGCAAAAGTGTTGCATAAAGCGCTTGTTGATTTGGGCTATGAGGTTACATCTATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAAATTGTCAAGGAGTTCAGAGATGGTTTGACGCAAGTTCTTATATCAACTGATGTTCTTGCTCGTGGGTTTGATCAGCAACAGGTTAATTTGGTCATCAACTATGATCTTCCAGTGAAACACACTGCTGTATACACCCGTGAACCTGAGCCCGATTGTGAAGTGTATTTGCACAGGGTTGGCAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAGGCTCATGTCGAAGATTGAGAACCATTTTGGCGCTAGTGTAACTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGCTGCTCTCAAGGAAGCCGGTTTACTGCAATAA 1458 0.4877 MAEPSTAAPPPPVTKSWADEAEEETNASATEPETSSVNVDALTIDENKNQPKLLDDPDDSNIQAVTSGDTPYTSAATFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNTEVLRKMGKYTGIASECAVPMDSRDALPIAKRAPIMAQVVIGTPGTIKKWMSFKKLGATRLKILVFDEADQMLAEDGFKDDSLRIMKEIERVNSNCQVLLFSATFNDTVKNFVSRTVKNDHNKLFVKKEELSLDAVKQYKVHCPDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAKVLHKALVDLGYEVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAVYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGASVTEVRAQSVEDYKAALKEAGLLQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5027g00013 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 475 IPR001650 -
Mupr5027g00013 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 105 IPR014014 GO:0003724
Mupr5027g00013 485 SMART helicmild6 341 434 IPR001650 -
Mupr5027g00013 485 Gene3D - 296 478 IPR027417 -
Mupr5027g00013 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 452 IPR027417 -
Mupr5027g00013 485 Pfam Helicase conserved C-terminal domain 312 434 IPR001650 -
Mupr5027g00013 485 SMART ultradead3 96 302 IPR014001 -
Mupr5027g00013 485 MobiDBLite consensus disorder prediction 1 68 - -
Mupr5027g00013 485 Pfam DEAD/DEAH box helicase 102 274 IPR011545 GO:0003676|GO:0005524
Mupr5027g00013 485 MobiDBLite consensus disorder prediction 28 45 - -
Mupr5027g00013 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 286 IPR014001 -
Mupr5027g00013 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 454 - -
Mupr5027g00013 485 Gene3D - 55 293 IPR027417 -
Mupr5027g00013 485 CDD SF2_C_DEAD 299 443 - -
Mupr5027g00013 485 CDD DEADc_DDX19_DDX25 83 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5027g00013 Mupr-Chr5027 62422 67212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5027g00013 77 466 Eukaryotic Initiation Factors Gene Family AT1G72730 37.596 1.24e-72 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5027g00013 K18655 - gmx:100778091 790.03