Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5026g00001 ATGTCGCTCAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGAGGTGCCGGTGGTAGACGCCGCCGCCGGGGAGGGTAGGGACGGTGGCGCCGAGGAGGCGGCCCACGGGAATGGGTGGGCTAACATGCTACCGGAGATTCTCGGAGAGATCGTGCGGCGAGTGGATGCCGCCGAGGAGCAGTGGCCAAGCCGGCAAAACGTCGTCGCCTGCGCGTGCGTGTGCAAGCGCTGGCGGGACATCACGCGCGAGGTCGTGCGTGAGCCTTCGCACCCCGGCAAAATCACTTTCCCTTCTTGCCTCAAACAGCCAGGACCACGTGACGCTCCTCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTATATCTTGCCCTTACACCATCTAGGAGATATAGATGTGGTACCCATACTGAGTATATAATTTCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAACCACCCCATAGTGGTGCAAGACCATCAAGTGGCAGGGCGAGCCGCCGGTTCGCCAGCAAGCAGATAAGTCCGCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTCTGCTCATTGAAGTGTCCTGTCTCACCAGCGGGTGAAAGTTCCAATAGCACGGCTCTTGATGGCCATAAGATGCACGATAAAGAACACGGTGCCTCTGGCTGCACAATCTTGAAGAACAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCACGGTCGTGTGACGGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACCAAACTTGCTTGTGAGTAA 1086 0.5239 MSLRKVFRSRKFSRSFKEVPVVDAAAGEGRDGGAEEAAHGNGWANMLPEILGEIVRRVDAAEEQWPSRQNVVACACVCKRWRDITREVVREPSHPGKITFPSCLKQPGPRDAPHQCLIKRNKKTSTFYLYLALTPSRRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGARPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVSPAGESSNSTALDGHKMHDKEHGASGCTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5026g00001 361 ProSitePatterns Tub family signature 1. 289 302 IPR018066 -
Mupr5026g00001 361 ProSitePatterns Tub family signature 2. 346 361 IPR018066 -
Mupr5026g00001 361 Gene3D Tubby Protein; Chain A 99 361 IPR025659 -
Mupr5026g00001 361 SUPERFAMILY Tubby C-terminal domain-like 92 361 IPR025659 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 289 305 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 271 288 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 147 163 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 318 337 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 163 187 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Mupr5026g00001 361 PRINTS Tubby superfamily signature 339 361 IPR000007 -
Mupr5026g00001 361 CDD F-box_AtTLP-like 43 87 - -
Mupr5026g00001 361 PANTHER TUBBY-RELATED 38 359 - -
Mupr5026g00001 361 Pfam Tub family 104 356 IPR000007 -
Mupr5026g00001 361 Pfam F-box domain 47 88 IPR001810 GO:0005515
Mupr5026g00001 361 SUPERFAMILY F-box domain 37 86 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5026g00001 Mupr-Chr5026 4690 9139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5026g00001 1 361 TUB Transcription Factor Family AT1G53320 69.657 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr5026g00001 Tub 3.3e-94 CL0395