Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4996g00002 ATGGATTTCAATATCTGCACTGTTGAAGAGATCTTCGCGGACTATAAGGGCCGAAAAACAGCTCTTATTCGCGCTCTGACTAACGATGTTGATGAAATTTTCAAGCTCTGTGATCCAGATAAGGATTGCTTGTGCCTCTATGGATATCCGAATGGGACCTGGGAAGTAACTCGGCCACAGAAGTTTCTTCCGGCGGATCTCCCTGAGCCAGTTCTTGGAATCAATTGGTCTAGAGATTTTGCTAGGGATGACAGGAAGTGGCTTTCTATGGTTTCTCTGCATAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTACCTTGGAGTTCATCTTAACCGTGATGAAAGGGAACGTTTATTTAGTTTGATCAATGATCTTCCCACCATTTTTGAAGTTGTGACTAACAAGAACAGAATTACGTACACACCCTTGGCTAGTCGAAACAGATCTCGGGGATTCACCCAGGCTTCTGGTGTATGCAAAACCAAAATCTTGCAGATGTCTGGAGATGGGAAAGGTAAAGGCATGCCAAAGTTAGTAGATGGGGATGATGAAGATGATGAGAATGATAAAAAACTTTGTGGAATTTGCGGTGGAAATTACGGTGTATATGAATTTTGGATCTGCTGCGATAAATGTGATACGTGGATCCATGGGAAGTGTGCTAAGACTACCCCTCAAATGGCTGAGAGTATGGACCAATATAAATGTCCATCATGCATCACGTTGATAAATTTTACGAGCTCTGTGATCCAGGATAACTTGTGCCTCTATGGACATCCGAATGAGACCTGGGAAGTAGCTGAGCCAGTGCCGTTAGTTCCGGCAGAGCTCCCTGAGCCAGTTCTTGGAATCAATTGGTGTAGGGATGGCAATAGTCGCAAGGACTGGTTTTCTCTGGTTGCTCTGCATAGTGATTTGTGGTTGCTTTCCATGGCCTTTTACTTTGGAGTTTATCTTAACCACAATGAAAGGGAACGTTTATTTTCTTTGATCAATGATCTTCCCACCGTTTCTGAAGTTGTGACCGACAAGAAACCAATGGACAAGCCCACCAAGGCTAGTGGAAGCAAATCTCGGGGATTCGGCAAGTTAAGGCTTCTGGTGTATGCAAAACCAAAACCTTGGAGAGATCTAGAGATGGGGAAGGTAAAATCATCCCAAAGTTTGAAGATGAGGATGATGAAACACTTTGTGGAGTTTGCGGTGGAACTTCTGGTGTATGCAAAACCAAAATCTTGCAGAGATCTAGTGATGGGAAAGTTAAAAGCATCCCAAAGTTTGCAGATGAAGATGAGGATGATGGAACACTTTGTGGAAGCTGCGGTGGAAATTACAGTGTATATGAATTTTGGATCTGCTGCGATACATGTGATACGTGGTACCATGGGAAATAAGGATAACTTGTGCCTCTATGGACATGCGAATGGGACCTGGGAAGTAAATGATCCATCACAGATAGTTCAGGAGAATCTCCCTGAGCCAATTGTTGGAATCAGTTGGTCTAGGGATTTAGCTAAGCACTGGCTTACAACGGTTGCTGTGAATTGTGATTCGTGGTTGCTTTCCCTGTCCTTTCACGTTGGATCTTTACTTGATCCAAAAGGAAGGAAACAATTATTTAATTTGATCAAAGATCTTCCCACCGTTTATGATGTTGTGACTGAAAATAAACCAATTGATGACAAGCCCACCGAGGCTAGCGAAAGCAAATCTTGGGAATCCACCGAGGCTTCTGGTGTATGCAAAACCAAAATCTTGCAGATGTCTGAAGATAGGAAAGGTAAAAGCATCCCAAAGCTTGAAGACGAAACATTTTGTGGAATTTGCGGTGGATGTTACAGTGTCTATGAATTTTGGATCAGCTGCGATACATGTAACAAGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTAAAATGGCTGAGAGCATGAAGCAATATAAGTGTTCATCATGCAGCATGAAGCAGTAG 1971 0.4307 MDFNICTVEEIFADYKGRKTALIRALTNDVDEIFKLCDPDKDCLCLYGYPNGTWEVTRPQKFLPADLPEPVLGINWSRDFARDDRKWLSMVSLHSDSWLLSVAFYLGVHLNRDERERLFSLINDLPTIFEVVTNKNRITYTPLASRNRSRGFTQASGVCKTKILQMSGDGKGKGMPKLVDGDDEDDENDKKLCGICGGNYGVYEFWICCDKCDTWIHGKCAKTTPQMAESMDQYKCPSCITLINFTSSVIQDNLCLYGHPNETWEVAEPVPLVPAELPEPVLGINWCRDGNSRKDWFSLVALHSDLWLLSMAFYFGVYLNHNERERLFSLINDLPTVSEVVTDKKPMDKPTKASGSKSRGFGKLRLLVYAKPKPWRDLEMGKVKSSQSLKMRMMKHFVEFAVELLVYAKPKSCRDLVMGKLKASQSLQMKMRMMEHFVEAAVEITVYMNFGSAAIHVIRGTMGNKDNLCLYGHANGTWEVNDPSQIVQENLPEPIVGISWSRDLAKHWLTTVAVNCDSWLLSLSFHVGSLLDPKGRKQLFNLIKDLPTVYDVVTENKPIDDKPTEASESKSWESTEASGVCKTKILQMSEDRKGKSIPKLEDETFCGICGGCYSVYEFWISCDTCNKWFHGKCVKITPKMAESMKQYKCSSCSMKQ 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4996g00002 656 CDD PHD_AL_plant 192 239 IPR044104 -
Mupr4996g00002 656 FunFam PHD finger alfin-like protein 600 654 - -
Mupr4996g00002 656 SMART PHD_3 192 240 IPR001965 -
Mupr4996g00002 656 SMART PHD_3 605 653 IPR001965 -
Mupr4996g00002 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 240 IPR013083 -
Mupr4996g00002 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 653 IPR013083 -
Mupr4996g00002 656 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Mupr4996g00002 656 ProSitePatterns Zinc finger PHD-type signature. 606 652 IPR019786 -
Mupr4996g00002 656 SUPERFAMILY FYVE/PHD zinc finger 601 654 IPR011011 -
Mupr4996g00002 656 ProSiteProfiles Zinc finger PHD-type profile. 603 655 IPR019787 -
Mupr4996g00002 656 CDD PHD_AL_plant 605 655 IPR044104 -
Mupr4996g00002 656 Pfam PHD-finger 193 240 IPR019787 -
Mupr4996g00002 656 Pfam PHD-finger 605 654 IPR019787 -
Mupr4996g00002 656 SUPERFAMILY FYVE/PHD zinc finger 182 245 IPR011011 -
Mupr4996g00002 656 PANTHER CPG BINDING PROTEIN 6 240 IPR045104 GO:0006355|GO:0042393
Mupr4996g00002 656 Pfam Alfin 7 133 IPR021998 GO:0006355|GO:0042393
Mupr4996g00002 656 Pfam Alfin 464 554 IPR021998 GO:0006355|GO:0042393
Mupr4996g00002 656 Pfam Alfin 251 342 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4996g00002 Mupr-Chr4996 8372 22055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4996g00002 466 656 Alfin-like Transcription Factor Family AT5G05610 50.515 1.09e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr4996g00002 Alfin 1.4e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4996g00002 K26274 - gmx:100782478 280.411