Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4996g00001 ATGGCTCCCAAACTCCTCACCATTGAAGAGATCTTCGCGGACTATAGAGCCCGAAGAACTGCTCTTATTCACGCTCTCACTCGCGACGTTGATAAATTTTACGAGCTCTGTGATCCAGATAAGGAGGGCTTGTGCCTCTATGGACATGCCAATGGGGCCTGGGAAGTAGCTCAGCCAGCAGAGTATGTTCCGCCGGATCTCCCTGATCCAATTGTTGGAATCAATTTTGCTAGGAATGAAACGCGCTTCAGCGACTGGCTTTCTCTCATTGCTATTCATAGTGATTCATGGTTGATTTCTGTGGCCTTTAAATTTGGATCTTGTCTTGACCGCAATGGAAGGTACGATCTAGCTTTGATGGAGAGCATATATATGGCAATAATTCAAGTCCATTGTGGCTCCCTATCCATTAAGGACATCCTTATGCAGCTTCAAGATCAGCCGGAAGACATGAATCATTTATTTCGTTTGATCAATCATCTTCCCACCGTTTTCGAAGTTGTGGCTGGCAAGAAACCAATTATTGACGACTCCACCGTGGCTAGTGGAAGCAAATCTCAGGGAATCACCAAGAGATCTAGTGATGGACAAGTTAAAAGCAACGCAAAGAGTGAAGATGAGGGTTATGAGGAGGATGAAGATGAGTGTTATGAGGAGGATAAAGATGAGGAGGATGAGGATGAGGATGAGGATGAGGATGAGGATGAGGATGAGGGTTATGAGGAGGATAAAGATGAAGGTTATGAGGAGGAAGAGGATGAGGGTTATAAGGAGGATGAAGATGAGGCTAAGCTAACACTTTGTGGAAGCTGTGGTCTAAGTGAGGGATATAATGAATTTTGGATCTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTATGATTACCCCTGAAAAGGCTGAGAACATGGAGCAATATATATGTCCATCATGCAGGAGGGGCGGGACCTAG 960 0.4531 MAPKLLTIEEIFADYRARRTALIHALTRDVDKFYELCDPDKEGLCLYGHANGAWEVAQPAEYVPPDLPDPIVGINFARNETRFSDWLSLIAIHSDSWLISVAFKFGSCLDRNGRYDLALMESIYMAIIQVHCGSLSIKDILMQLQDQPEDMNHLFRLINHLPTVFEVVAGKKPIIDDSTVASGSKSQGITKRSSDGQVKSNAKSEDEGYEEDEDECYEEDKDEEDEDEDEDEDEDEDEGYEEDKDEGYEEEEDEGYKEDEDEAKLTLCGSCGLSEGYNEFWICCDICERWFHGKCVMITPEKAENMEQYICPSCRRGGT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4996g00001 319 FunFam PHD finger alfin-like protein 259 316 - -
Mupr4996g00001 319 SMART PHD_3 267 315 IPR001965 -
Mupr4996g00001 319 Pfam PHD-finger 268 316 IPR019787 -
Mupr4996g00001 319 PANTHER CPG BINDING PROTEIN 7 315 IPR045104 GO:0006355|GO:0042393
Mupr4996g00001 319 ProSitePatterns Zinc finger PHD-type signature. 268 314 IPR019786 -
Mupr4996g00001 319 ProSiteProfiles Zinc finger PHD-type profile. 265 317 IPR019787 -
Mupr4996g00001 319 Pfam Alfin 7 120 IPR021998 GO:0006355|GO:0042393
Mupr4996g00001 319 MobiDBLite consensus disorder prediction 207 259 - -
Mupr4996g00001 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 315 IPR013083 -
Mupr4996g00001 319 SUPERFAMILY FYVE/PHD zinc finger 256 317 IPR011011 -
Mupr4996g00001 319 MobiDBLite consensus disorder prediction 179 197 - -
Mupr4996g00001 319 MobiDBLite consensus disorder prediction 179 261 - -
Mupr4996g00001 319 CDD PHD_AL_plant 267 316 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4996g00001 Mupr-Chr4996 2349 4992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4996g00001 7 314 Alfin-like Transcription Factor Family AT5G05610 41.883 2.08e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr4996g00001 Alfin 5.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4996g00001 K26274 - gmx:100782478 286.96