Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4988g00006 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGCCCAGGAGAAGAAGCTTCCCGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCAGGAGAGAGTCTCCATCCCAGAAAGCCCTTAATGCATCCCTTTCCGCCAAAACCTGCCCCGACCATTGCCCAGTGTGCCATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTTAGAGATAGTAGGGTGCTTTAATCAGCGCGCGCAGAAATTGATGGAGCTACATCTCGCTTCTGGCTTTAGAAAGTACTTTTTCTGGATCAAAGGCAAATTACAAAAGAACCACACTGCTCTAATTCAAGAAGGAAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCCATTCGAAAAATACTAAAGAAATACGATAAGATTCATTATTCCAAGCAAGGGCAACTATTCAAGTCGCAGGTTCAGAGTATGCACAAGGAAATTCTCCAAAGTCCCTGGCTTTGTGAACTTATGGCCTTCCACATCAATTTAAGGGAAAGTAAGGTCAAGTCAAGGAAGGCACCTGCTTTGTTCGATGGATGTTCTCTCACATTTAAGGATGGGAAGCCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGATTTGACTTGCTCTATATGCTTGGACACGGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGTTATATTTGTGCATGCTCAGCTGCATCAGTATCTATAGTTAACGGACTTAAGTCTGCAGATCCTAAAGAGAAATGTCCTCTATGTCTTTATGAAGGTTCTGTGCACTTGGAAGAACTAAATATTCTGTTGGGCCGAAGCTGTCAGGAATACTGGGAGCAGAGACTAAAGACAGAGAGGGTGGAGAGGGTTAAGCAAATAAAGGAACATTGGGATTCACAGTGTAGGGCTTTCGTGGGGGCAGTGTTCTACAAAGGATTCTACAAG 984 0.4289 MKFCKKYQEYMQAQEKKLPGVGFKKLKKILKKCRRESPSQKALNASLSAKTCPDHCPVCHGTFFPSLLNEMLEIVGCFNQRAQKLMELHLASGFRKYFFWIKGKLQKNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRESKVKSRKAPALFDGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADPKEKCPLCLYEGSVHLEELNILLGRSCQEYWEQRLKTERVERVKQIKEHWDSQCRAFVGAVFYKGFYK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4988g00006 328 CDD RING-HC_BAH1-like 210 279 - -
Mupr4988g00006 328 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Mupr4988g00006 328 SUPERFAMILY RING/U-box 213 269 - -
Mupr4988g00006 328 CDD SPX_BAH1-like 2 147 - -
Mupr4988g00006 328 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Mupr4988g00006 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 IPR033326 -
Mupr4988g00006 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 320 IPR013083 -
Mupr4988g00006 328 Pfam RING-type zinc-finger 220 266 IPR027370 -
Mupr4988g00006 328 ProSiteProfiles Zinc finger RING-type profile. 220 268 IPR001841 -
Mupr4988g00006 328 SMART ring_2 220 268 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4988g00006 Mupr-Chr4988 31705 34385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4988g00006 210 268 C3H Transcription Factor Family AT4G28270 39.394 4.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4988g00006 K16275 - gmx:100787904 607.446