LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4988g00001	ATGGGAAATGAGAATGATTCTCAGGTGATGCACAACCCACACGTGCGAGGGCGTGATTGTTTGGCAAAAGGAGTCATAGTTTCTCGCAGGAAGAAAATGAGTAGACGCTCGAGCAGAACCGTCTACGTTGGGAATCTGCCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACACACATTGACCTAAAAGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGACCGGTATAGTAGTCACAGCAATGGTGGCCGGGCTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGTTTTAGTCACTGGATTGCCCTCTTCGGCATCTTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGAACGACTGGAATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGCGTGAGGGAATATGATTCAAGGAGGGATTCCTCTAGAAGTCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGTAGCCGTAGTCACAGTCGGGGCCGGAGTCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCTCGGTCAAGATCAAGGTCCCATTCATTGTCAGGGTATGAAATGTTTTCGAATATATGGAAACTTGCAGCATACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGGTTCAATTGCCTGCAACTCATTTTGTTGTGGAGGTATGATATTTTTTAGAATGGGCGACTTTGGATACCCTCACAGTACATCTGTTCTAATACTTTTAGCATGTAAATGTCCATGGGTGCTAGATTGGGAACCAAGGAGATCATGGATTGCCATTTTAGAGCTGGATTTTCTATAA	1128	0.4566	MGNENDSQVMHNPHVRGRDCLAKGVIVSRRKKMSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSHSRGRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSHSLSGYEMFSNIWKLAAYWKLEIRILVGFGSIACNSFCCGGMIFFRMGDFGYPHSTSVLILLACKCPWVLDWEPRRSWIAILELDFL	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4988g00001	375	CDD	RRM1_SF2_plant_like	40	110	-	-
	Mupr4988g00001	375	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	144	222	IPR000504	GO:0003723
	Mupr4988g00001	375	SMART	rrm1_1	40	110	IPR000504	GO:0003723
	Mupr4988g00001	375	SMART	rrm1_1	145	218	IPR000504	GO:0003723
	Mupr4988g00001	375	MobiDBLite	consensus disorder prediction	105	123	-	-
	Mupr4988g00001	375	CDD	RRM2_SF2_plant_like	144	219	-	-
	Mupr4988g00001	375	MobiDBLite	consensus disorder prediction	239	259	-	-
	Mupr4988g00001	375	Gene3D	-	143	221	IPR012677	-
	Mupr4988g00001	375	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	39	114	IPR000504	GO:0003723
	Mupr4988g00001	375	FunFam	ASF/SF2-like pre-mRNA splicing factor SRP31	33	143	-	-
	Mupr4988g00001	375	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	146	208	IPR000504	GO:0003723
	Mupr4988g00001	375	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	41	108	IPR000504	GO:0003723
	Mupr4988g00001	375	FunFam	serine/arginine-rich splicing factor SR34A-like	144	221	-	-
	Mupr4988g00001	375	Gene3D	-	27	141	IPR012677	-
	Mupr4988g00001	375	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	30	287	-	-
	Mupr4988g00001	375	MobiDBLite	consensus disorder prediction	105	139	-	-
	Mupr4988g00001	375	MobiDBLite	consensus disorder prediction	260	287	-	-
	Mupr4988g00001	375	MobiDBLite	consensus disorder prediction	219	287	-	-
	Mupr4988g00001	375	SUPERFAMILY	RNA-binding domain, RBD	37	208	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4988g00001	Mupr-Chr4988	3536	7485	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4988g00001	40	228	Eukaryotic Initiation Factors Gene Family	AT4G34110	24.242	5.58e-06	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4988g00001	K12890		-	gmx:100789847	351.288