LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4986g00001	ATGTATTGCAATTTCAAGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCGTGAGGACGATGCTAGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTGGAATACTTAAGGGCCCATTTGAAGTATGAGAAGCACCCCAAGATCAAGGAGGCAATAACACAGAAATTTGCTCAGTACTTGAGGAGGGCTGAGGAGATTCAAGCCATTCTCGATGCAGGAGGTGGTGAAGTAAACTCGAATAGAGATACGGTGGGTTCTGTGAGGCCAAAGACAAGTGGGGAAGGAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGATGAAGGCTGCTCTTGATTCTGTTATAATCAAAGAGAAACCGAATGTTAGATGGAGTGATATCGCCGGCCTTAAGAGTGCCAAACAGGCATTGCAAGAGGCTGTCATATTACCTGCTAAGTTCCCTCAATTTTTCACTGGTAAGAGACAACCATGGAGAGCATTTCTGTTGTATGGTCCACCTGGAACAGGGAAATCATACTTAGCAAAGGCAGTAGCAACAGAAGCTGACTCTACATTCTTCAGTGTTTCATCGTCAGATCTTGTTTCTAAGTGGATGGGTGAGAGTGAAAAGCTGGTTGCAAGTCTTTTCCAAATGGCTCGTGATAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAAGTGAAGCATCAAGAAGAATTAAAACTGAACTTTTAGTGCAAATGCAGGGTGTTGGAAACAATGATCAGAAAGTTCTCATCCTTGCAGCCACAAATACTCCTTACGCACTGGATCAGGCCATTCGGAGACGCTTTGACAAACGCATACACATTCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAACCTCACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTGCTGTTTGTGTTAAAGATTCACTATTTGAACCTGTCCGGAAAACACGAGACGCTAAGTTCTTCAGGAAAACCTCTAGAGGAATGTGGGTTCCTTGTGAACCTACTCGGCGTGGAGCTGTTAATGTTAGCCTGGAGGAACTTGATGCACAGGGCCTTGCTTCAAAGATTCTTCCACCACCCATCACTAGAACAGATTTTGATAAAGTACTGGCGAGACAGAAACCAACTGTTAGCAAGGGTGATCTGGAGGTGCATGAGAGATTCACCCAAGAGTTTGGGGTGGAGGGATAA	1296	0.4321	MYCNFKEHAAEYVKQAVREDDARNYKKAFTLYMNALEYLRAHLKYEKHPKIKEAITQKFAQYLRRAEEIQAILDAGGGEVNSNRDTVGSVRPKTSGEGEKDKEDPEQAKMKAALDSVIIKEKPNVRWSDIAGLKSAKQALQEAVILPAKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVASLFQMARDNAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLILAATNTPYALDQAIRRRFDKRIHIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDIAVCVKDSLFEPVRKTRDAKFFRKTSRGMWVPCEPTRRGAVNVSLEELDAQGLASKILPPPITRTDFDKVLARQKPTVSKGDLEVHERFTQEFGVEG	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4986g00001	431	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	123	426	IPR027417	-
	Mupr4986g00001	431	Gene3D	-	6	75	-	-
	Mupr4986g00001	431	FunFam	Suppressor of K+ transport growth defect 1	6	75	-	-
	Mupr4986g00001	431	Pfam	MIT (microtubule interacting and transport) domain	8	70	IPR007330	-
	Mupr4986g00001	431	CDD	RecA-like_VPS4	122	292	-	-
	Mupr4986g00001	431	FunFam	Vacuolar protein sorting-associated protein 4	123	303	-	-
	Mupr4986g00001	431	Pfam	Vps4 C terminal oligomerisation domain	364	428	IPR015415	-
	Mupr4986g00001	431	SUPERFAMILY	MIT domain	4	76	IPR036181	-
	Mupr4986g00001	431	PANTHER	AAA DOMAIN-CONTAINING	23	428	-	-
	Mupr4986g00001	431	SMART	AAA_5	160	296	IPR003593	GO:0016887
	Mupr4986g00001	431	MobiDBLite	consensus disorder prediction	80	107	-	-
	Mupr4986g00001	431	Pfam	ATPase family associated with various cellular activities (AAA)	165	294	IPR003959	GO:0005524\|GO:0016887
	Mupr4986g00001	431	Gene3D	-	296	411	-	-
	Mupr4986g00001	431	SMART	smart	2	79	IPR007330	-
	Mupr4986g00001	431	FunFam	vacuolar protein sorting-associated protein 4A	296	411	-	-
	Mupr4986g00001	431	Gene3D	-	123	419	IPR027417	-
	Mupr4986g00001	431	ProSitePatterns	AAA-protein family signature.	266	285	IPR003960	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4986g00001	Mupr-Chr4986	1928	8652	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4986g00001	159	352	Calmodulin-binding Proteins	AT3G56690	36.224	3.07e-35	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4986g00001	K12196		-	csav:115706151	716.842