Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4984g00006 ATGAGTGAGAGAATGGAATCGAGTAGCATAGAGAGCAGCACGATGACTATGAATATGATGGAAGAGGATGAGCATCCCCATCAGTTTTCTTCAATCTCGAAGCTTCATAACAATGGTCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAATGGGCACACACTTTGTTCAACTTGCAAGACAAGGGTACACAACCGATGTCCAACTTGCAGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCATGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAGCACGAGGCTATTTGTAACTACAGACCATACAACTGCCCTTACGCTGGGTCAGACTGTTCAGTGGTGGGGGATATTCCATGCCTTGTCGCACATTTAAGGGATGACCACAGGGTTGACATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCAGTTTACATGGCGTTCCTCCGATTCATGGGTGACGAAAGAGAGGCTCGGAACTACAGCTATAGCTTGGAGGTGGGAGGAAATGGACGTAAGCTAACATTTGAGGGGAGTCCACGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGATAGTCATGATGGTCTCATCATTTACCGCAACATGGCACTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGGAGGATATGGAAAGAACAACAAAACCCTGAAGCTGGAGTGTGCATACCCAACCTCTGTAGCTAG 942 0.4618 MSERMESSSIESSTMTMNMMEEDEHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNYRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEAGVCIPNLCS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4984g00006 313 FunFam E3 ubiquitin-protein ligase SINAT3 101 159 - -
Mupr4984g00006 313 Pfam Seven in absentia protein family 93 292 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mupr4984g00006 313 CDD Sina 165 293 - -
Mupr4984g00006 313 SUPERFAMILY RING/U-box 38 90 - -
Mupr4984g00006 313 CDD RING-HC_SIAHs 49 87 - -
Mupr4984g00006 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 159 IPR013083 -
Mupr4984g00006 313 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 292 IPR008974 GO:0005515
Mupr4984g00006 313 SUPERFAMILY TRAF domain-like 104 296 - -
Mupr4984g00006 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 103 IPR013083 -
Mupr4984g00006 313 ProSiteProfiles Zinc finger SIAH-type profile. 104 164 IPR013010 GO:0008270
Mupr4984g00006 313 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 24 298 - -
Mupr4984g00006 313 FunFam E3 ubiquitin-protein ligase SINAT5-like 160 292 - -
Mupr4984g00006 313 ProSiteProfiles Zinc finger RING-type profile. 51 87 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4984g00006 Mupr-Chr4984 37715 42228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4984g00006 1 299 C3H Transcription Factor Family AT2G41980 70.861 2.93e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4984g00006 K04506 - gmx:100792687 637.106