LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4977g00006	GGTAAAACCGAGAAAGAAATTGAAACTAAAGCATCGAAATCCATTGAAAAACGAAAACCATTCCACTACTCAAACTCTCCGGCGGCGTCTTCTCTGTTACGTCGTCGTCTCATAGCCACCGCCACAACCCTTCAATTTGCTATCATGGCTGGGCTAGCACCAGAAGGATCACAATTCGATGCTCGTCAATATGATGCTAAGATGAATGAATTGCTTGGAAATGACGGGCAAGAGTTTTTTACTCCTTATGACGAAGTTTGCGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTATGCATACGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGGGGGATTGTACCTTTCTGCCAGGGGCTTGATGTAATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACGTTTTGTTCTGGAGTTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAGGCACTGGTTCTTGCTCCCACTCGGGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCATTAGGGGACTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCATTGTTCGTGAAGATCAACGCATTCTCTCCAGTGGGGTTCATGTAGTTGTTGGTACTCCTGGTCGTGTATTTGACATGTTGCGGAGGCAATCTTTGCGCCCTGATAACATCAGGATGTTTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCTAGGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTAAAACGTGATGAGCTTACCTTGGAGGGGATCAAGCAATTTTTTGTCAATGTAGATAAGGAGGAATGGAAGCTGGAGACGCTGTGTGATCTTTATGAAACTTTGGCAATCACCCAGAGTGTTATCTTTGTGAACACGAGACGCAAGGTAGATTGGCTGACAGACAAAATGCGGAGTCGTGATCACACAGTTTCAGCCACCCATGGAGATATGGACCAAAACACAAGGGATATCATCATGCGGGAATTCCGTTCCGGGTCCTCCCGTGTTCTTATTACCACGGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTTATAAATTTTGATCTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAGGGATGATGAAAGGATGCTGTTGGACATCCAAAAGTTTTATAATGTGGTGATTGAGGAGCTGCCAGCCAATGTAGCTGATCTCCTCTGA	1386	0.4567	GKTEKEIETKASKSIEKRKPFHYSNSPAASSLLRRRLIATATTLQFAIMAGLAPEGSQFDARQYDAKMNELLGNDGQEFFTPYDEVCESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTIVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRMFVLDEADEMLSRGFKDQIYDIFQLLPPRIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLLDIQKFYNVVIEELPANVADLL	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4977g00006	461	Pfam	DEAD/DEAH box helicase	113	274	IPR011545	GO:0003676\|GO:0005524
	Mupr4977g00006	461	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	235	243	IPR000629	-
	Mupr4977g00006	461	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mupr4977g00006	461	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	442	IPR027417	-
	Mupr4977g00006	461	Gene3D	-	80	295	IPR027417	-
	Mupr4977g00006	461	MobiDBLite	consensus disorder prediction	1	22	-	-
	Mupr4977g00006	461	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	119	289	IPR014001	-
	Mupr4977g00006	461	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	74	442	-	-
	Mupr4977g00006	461	SMART	ultradead3	107	304	IPR014001	-
	Mupr4977g00006	461	FunFam	Eukaryotic initiation factor 4A-II	76	295	-	-
	Mupr4977g00006	461	CDD	DEADc_EIF4A	92	290	-	-
	Mupr4977g00006	461	Gene3D	-	296	461	IPR027417	-
	Mupr4977g00006	461	SMART	helicmild6	341	422	IPR001650	-
	Mupr4977g00006	461	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	300	461	IPR001650	-
	Mupr4977g00006	461	CDD	SF2_C_DEAD	301	431	-	-
	Mupr4977g00006	461	FunFam	Eukaryotic initiation factor 4A-III	296	461	-	-
	Mupr4977g00006	461	Pfam	Helicase conserved C-terminal domain	314	422	IPR001650	-
	Mupr4977g00006	461	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	88	116	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4977g00006	Mupr-Chr4977	46808	49731	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4977g00006	49	461	Eukaryotic Initiation Factors Gene Family	AT1G72730	89.130	0.0	774

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4977g00006	K03257		-	gmx:100806638	795.038