Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr496g00005 ACGTTGGGCATCCAGCAGGTGAAATTGCAAGGGCAGTTTGGTCTATTCAGCTGTTGTCCACGCTATATCTTCTGGGTCACTGCTTCACTCGCTGTTCTCATCCTAAAACCCAGAACCAGATCTAGGGTTTATTTCGATTTCATTTTGAACTATTTTTTGCGCCTTCAAAGAAAAAGGATGGGAGAATTGAAGGACACTGAGGCTTACGAGGAAGAGCTCCTCGACTACGATGAAGAAGATGAAAAAGCTCCCGATTCTGCCAAACCAGCTGCTGAACCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTACGAGCAATTGATTCGTCCACTACAATTTTGTTTGCTTCTTCATTAGTGCAACACGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCAACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATATGTCATGAATTTGAGAGATTCAGCACTTATCTTTCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGTACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTGAAGAACCCCATGGAAATTTATGTAGACGATGAGGCCAAATTGACTCTTCATGGTCTTGTGCAGCACTACATCAAACTGCAAGAGTCAGAGAAGAATCGAAAATTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAAAGTGTCAGCAGAGCTGGAGAGTTGAACAAGTTGCTTGTGGAATGTAATTTCCCATCCATCTGCATACATTCTGCTATGTCACAGGAAGAGAGATTGAAACGATACAAGGGCTTCAAAGAAGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACAAAGGGGCTTGCAATTACTTTTGTGTCCTCTACTGCTGACTCTGAAGTTCTTAATCAGTGCCAAATTGATGACGTATTGGAACAATTAGGAGGCGGAATAGGA 1266 0.425 TLGIQQVKLQGQFGLFSCCPRYIFWVTASLAVLILKPRTRSRVYFDFILNYFLRLQRKRMGELKDTEAYEEELLDYDEEDEKAPDSAKPAAEPGKKGYVGIHSSGFRDFLLKPELLRAIDSSTTILFASSLVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLSDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAGELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQCQIDDVLEQLGGGIG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr496g00005 422 Gene3D - 122 267 IPR027417 -
Mupr496g00005 422 SMART helicmild6 306 387 IPR001650 -
Mupr496g00005 422 FunFam DEAD-box ATP-dependent RNA helicase 263 415 - -
Mupr496g00005 422 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 296 IPR014001 -
Mupr496g00005 422 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 250 405 - -
Mupr496g00005 422 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 422 IPR001650 -
Mupr496g00005 422 Pfam Helicase conserved C-terminal domain 280 387 IPR001650 -
Mupr496g00005 422 CDD SF2_C_DEAD 267 396 - -
Mupr496g00005 422 Pfam DEAD/DEAH box helicase 132 265 IPR011545 GO:0003676|GO:0005524
Mupr496g00005 422 SMART ultradead3 124 314 IPR014001 -
Mupr496g00005 422 Gene3D - 268 416 IPR027417 -
Mupr496g00005 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 400 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr496g00005 Mupr-Chr496 23520 30191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr496g00005 144 409 Eukaryotic Initiation Factors Gene Family AT5G11170 68.111 1.93e-148 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr496g00005 K12812 - gmx:100799082 558.14