LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4965g00001	ATGGAGGCGGATTTCGCGACGAATGATATGCTCACGCTCACACAGGATGCTTTTGACGCCAACGACAATGACGATGTAGCTATTGAAGGGGAACGATGTGGAATATGTATGGACATTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTCGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTATCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTAAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTGTTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCAACTATTGAAGGAGGTTCTGATCTCGACACATCAATAGCTTGTGATTCATGTGATATATGGTATCATGCTTTCTGTGTGGGATTTGATACTGAAGGTACATCAGAAAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAGAGGAACATCCAATTCAATAGAGAGGACAACAGTGGAATGTAATGCAGATAATAGTAACGGTGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCAGAAACAAGTGAGAAAAGCCTAATGCCTCTTGAAGTCGGTGGGGATCCAATGATTGAATCATGTACATTAATGCCCGACACAAATAATCAGCAAAGTGGGGAAGAGAAGATAAATACATTACCAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCAAACAGTATATCCTGTAGCCTAACTTCTAAATCCTTAGTGAATAATTTAGAGAAAAGTGCCAGTGGAGCAAGGAATGAACCAAGTGGGTTTGATGGAACCAAGTTCTTTGATGAGTCCCTCTCCCATATCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGTTCTTTTTTATCTGACAAGAATGAGATAAAAGATCAAGCAACTGATGTCCCGTGCTTGAGTTCAGAAGAATGTTTTATGAAAGAAGATGTAATTGAAGCCAATGCTCATGAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGTTGATTACAGTAATGAGCAAGTTCATATAAAAGCTGATGATGGAGATGCCAAAACTGAACTTCCGGATGAAGTTGTGCAAAAGAAAATTAAAGCTACCGGCAGTCAAATGAGTAGTACTAATGATTCAGTCGATGCTCATCTTTTAGAAAATGCTCAGAAAAAACCTGCTTTAAAACATTCTCCAACAAAGGCGATTGTCACACCAGATATAATGAATATAGTTAAAGGGACAAACCGGAGGCTTTCTAAGGGACTTACTGGCAGTAATGCTTGTGACAAGTTATCTGAAAACAGAGGAAGTATGGCTGGGTTGAGGGTTAAAAAGATCTTGAAGAGAGTTTCTGATGATGGAGAATCATCTTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGATAACCATTTTGATCCAAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCGGCTATAAAGGCAAAGAAGTCAATGTTACAGAAAGGAAAAGTGCGTGAACATCTAACAAAGAAAATTTTTTCCACTTCGAATGGAAGAAGAAAGCGGGCATGGGATAGGGACTGTGAAATTGAATTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGGTTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAGGCCAAGGATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAGAGGATGTCAAACCTCTCTCTGTGCTTAAAACTATTGCTAACTCAGAGCAAACTAAACAAAACCCATCAGAAAAAATACCACATCTATCTGTTGATAACAATATTATTAAAGCAACATATGTAAATAATCTTTTACCAAAGACCAGCGATTGTTCATCTGAAAAAAAAATAGATAAGAAGATTGGACATGGTCCAGTTGGTGATAATTCAGCTTCTGGTAAAGTAGGTTTAAACAATCACTCAGAGAGGATATCAGTTTCTTCAGCTGGTACTAAAACTAGCACAAAGGAGTTAGGCCTTAAATCTGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGCAGGAACACAGCAAATGGAGATCAGGAAGGCAATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCTGTATTGGCACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGACACAACTTTACCGCCTGACAGAACGTTTATTGAGGAACACAAATCTGGCAGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAAGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTAAACCTTTGTTCACAAGAGTTCTTGCATCGCACAGATAACACAAAAACCACTGTAGCCACAGATAAAAGTCCACCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAACTAAATACTGATGATCTTTCAACTGATCCTGCTATTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTAGTAGTCCACATGAGAACAGAGAAACATGTAATGGTGATATGGTGGGGCCTGATAATATTTTTGAACTGGATTCTCATCCTGAGCTGGATATTTATGGCGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTGTTACAAAGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAATGTCAGATATCAATTTGGATAATGCAGACTGTGAGGGGTCTGAAAGAAATGAAGTGCCAGGAGATGCATCCTGCTTGCCAAATTGTCACAATGATGCAGCCCCTGGGGATAGAGCTTCTACAATTGATACCGAGATGAGCCAGCCTTCTGTTTCTTCTGAGCTCCTATCCTGTGAGGGTGCTGTTGAGCCTCATGATTCAGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTTATAAAAAAATTTCCAGACGTTGAGTCAAGATCATTACATGGAGATGGCGAGACAGAAACTCTAAGCGTGGCCAGTGACTGCCATAATGACAACAAACATGTCTTGTTGGACAATGTTGTAAATGCTTCGGAACTAGGGAATGAGAATCTGAGAGAAAAAGTTTCTGTTAGCACCATTACTGACAAATCTTCTAATGTGTCTGATACTGGTGAAATTTTCCAAAGGAAGGAAGAGAAATCTGATGCCACTGCTAAGCAGACTGATTCTGTAAATCATGTAACTAAAAAGGTGGAATCATACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTACAAAAACGACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTTCTCATAAAGGAAGGTGAAAAAGTAAAGAAACTTGCAGAGCAGTATGCTAAAGCAGCCCAACAGAACATAAAAAATTGA	3879	0.397	MEADFATNDMLTLTQDAFDANDNDDVAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEYQLITCVPVYDTIGNNKVEDDSFLRDDDWSIEGKNNTLSFPSYYIDENAVVCLDGDGCKVRNGLATIEGGSDLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVDEVSRGTSNSIERTTVECNADNSNGECHAEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPETSEKSLMPLEVGGDPMIESCTLMPDTNNQQSGEEKINTLPIMEEEELELSLSNSISCSLTSKSLVNNLEKSASGARNEPSGFDGTKFFDESLSHIKTSPSRIESDMGLHLGLSVGSFLSDKNEIKDQATDVPCLSSEECFMKEDVIEANAHEDNARVAGGKRKHVDYSNEQVHIKADDGDAKTELPDEVVQKKIKATGSQMSSTNDSVDAHLLENAQKKPALKHSPTKAIVTPDIMNIVKGTNRRLSKGLTGSNACDKLSENRGSMAGLRVKKILKRVSDDGESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVREHLTKKIFSTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKVETLKSVLDLLRKGSDSPESKQASECQAKDPILSRLYLADTSVFPRKEDVKPLSVLKTIANSEQTKQNPSEKIPHLSVDNNIIKATYVNNLLPKTSDCSSEKKIDKKIGHGPVGDNSASGKVGLNNHSERISVSSAGTKTSTKELGLKSGCMKSDKRKWALEVLARKTAATSRNTANGDQEGNAVFKGNYPLLAQLPIDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLAVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQEFLHRTDNTKTTVATDKSPPASSAMLTDQQSELNTDDLSTDPAIETALKNAGLLSDSPPSSPHENRETCNGDMVGPDNIFELDSHPELDIYGDFEYDLEDEDYIGASVTKVSNPKQEQNESKVKLVFSTMNLKMSDINLDNADCEGSERNEVPGDASCLPNCHNDAAPGDRASTIDTEMSQPSVSSELLSCEGAVEPHDSEFEELYGPDKEPLIKKFPDVESRSLHGDGETETLSVASDCHNDNKHVLLDNVVNASELGNENLREKVSVSTITDKSSNVSDTGEIFQRKEEKSDATAKQTDSVNHVTKKVESYIKEHIRPLCKSGVITADQYRWAVTKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAKAAQQNIKN	1292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4965g00001	1292	SMART	PHD_3	131	183	IPR001965	-
	Mupr4965g00001	1292	ProSiteProfiles	Zinc finger PHD-type profile.	65	185	IPR019787	-
	Mupr4965g00001	1292	MobiDBLite	consensus disorder prediction	1196	1212	-	-
	Mupr4965g00001	1292	Pfam	PHD-finger	148	183	IPR019787	-
	Mupr4965g00001	1292	Pfam	Zinc finger, C3HC4 type (RING finger)	33	71	IPR018957	GO:0046872
	Mupr4965g00001	1292	MobiDBLite	consensus disorder prediction	922	949	-	-
	Mupr4965g00001	1292	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	128	187	IPR013083	-
	Mupr4965g00001	1292	SUPERFAMILY	RING/U-box	24	78	-	-
	Mupr4965g00001	1292	ProSitePatterns	Zinc finger RING-type signature.	49	58	IPR017907	-
	Mupr4965g00001	1292	PANTHER	RING FINGER PROTEIN 41, 151	114	1282	-	-
	Mupr4965g00001	1292	SUPERFAMILY	FYVE/PHD zinc finger	146	185	IPR011011	-
	Mupr4965g00001	1292	Coils	Coil	534	554	-	-
	Mupr4965g00001	1292	ProSiteProfiles	Zinc finger RING-type profile.	33	72	IPR001841	-
	Mupr4965g00001	1292	MobiDBLite	consensus disorder prediction	741	763	-	-
	Mupr4965g00001	1292	MobiDBLite	consensus disorder prediction	1192	1212	-	-
	Mupr4965g00001	1292	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	14	95	IPR013083	-
	Mupr4965g00001	1292	SMART	ring_2	123	182	IPR001841	-
	Mupr4965g00001	1292	SMART	ring_2	33	71	IPR001841	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4965g00001	33	119	C3H Transcription Factor Family	AT3G58030	32.632	2.26e-07	53.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mupr4965g00001		PHD	2e-08	CL0390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4965g00001	-		-	gmx:100808102	2170.97