Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4961g00005 ATGACGTCTGTGTGTGAGTTCTTGTATCAGCTTTATGCCAAGACAATAGTCCTATTTACATACATGCTAATAGAGCTTATCCTTATCATTCAGTACCTTATTAAGTCACGTACACGCCCAATTTCCCCTTCCCAGTACCTCAATTTCATTGAAGAGAAGAACCCCACAATTCGCTGCACTACAAGACTGAAGACAGAGCACATAGACTGCAGAGTGTGCTTATCCGAATTCGAGGAAGGGGACAAGGTGAGAAATCTCAGCTGCAGACACACATTTCACAAGGATTGCTTGGATCAGTGGTTGCAGCAATACTGTGCTACGTGCCCTCTTTGCAGGAACAAGGTGTTGCCCGATGATATTGTTCCCAACTACAACATGCTTCAAAATCAGGACCACAGGAGTGGTGAAAGTGTAACCTTTTCCATTTTAAATGATGGTGACAGGGGACTAGGGATGGAGTACAACAAGGGGTCCAACCATCTTTTCTCTTTTCCTAGCTCTAATCTTATGAGTTGCTTAGGTGGGACTCGCTTCATCGAAATAAATTAG 549 0.4353 MTSVCEFLYQLYAKTIVLFTYMLIELILIIQYLIKSRTRPISPSQYLNFIEEKNPTIRCTTRLKTEHIDCRVCLSEFEEGDKVRNLSCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDIVPNYNMLQNQDHRSGESVTFSILNDGDRGLGMEYNKGSNHLFSFPSSNLMSCLGGTRFIEIN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4961g00005 182 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Mupr4961g00005 182 Pfam Ring finger domain 69 112 IPR001841 -
Mupr4961g00005 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 117 IPR013083 -
Mupr4961g00005 182 SUPERFAMILY RING/U-box 50 120 - -
Mupr4961g00005 182 PANTHER - 1 134 - -
Mupr4961g00005 182 SMART ring_2 70 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4961g00005 Mupr-Chr4961 42999 44626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4961g00005 69 121 C3H Transcription Factor Family AT1G15100 58.491 3.07e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4961g00005 K16282 - gmx:102669811 229.95