Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4953g00006 ATGACGAGTGTGATCCTCAGAAGATCCTCTTCCGTATTCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCTGTCGAGCCGATTCCGCACCACCTCCTCCGCCGCCGCCTCGCCGTTCTCAGGCACGGCCTCTCCGGCGATGGATCCCGAGCCTTTCACGCGAAATCCGAACCGCTGAATTTTCGCTTGTCGCCGGTTTCTCGTGCGGCGCAGTTGGCCGTAGAGCGCGATTACGACGAGGAAGGTTGTGACGCGAACTGCGACAAAGGACTCGAGATCGCGAAGCTCGGAATCTCTCCGGAGATCGTGGATGCCCTGGCCAAGAAAGGGATCGCGAAGCTCTTCCCCATTCAGAAAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGAACGGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGATTAATGCTAAGCATGGGCGAGGAAAGGATCCTTTGGCTTTGGTTTTGGCTCCTACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCGAACTTGGACATGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATTAGGCAGCTTAATTATGGTGTGGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGGGGGTCACTGAATTTGAAGGATGTTAAGTTCGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGAGGTTGTCTCCAAATCGTCAAACTCTTATGTTCTCAGCAACAATGCCCTCTTGGATAAGGAATCTTACCCGCAATTACCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTATTCTCTATTGCATCTGATGCGTACACTAAAGCAGGACTTCTTGCACCATTGATAACAGAACATGCGAATGGGGGAAAGTGTATTGTTTTCACTCAAACCAAACGCGATGCTGATCGATTATCCTATGTCATGGCAAAAAGCCTTAGATGTGAGGCATTGCATGGAGATATTTCGCAAACTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTAGCAACTGATGTTGCCTCACGTGGGCTTGATATTCCAAATGTTGATCTTGTAATACATTATGATCTTCCTAATTCATCAGAGATATTTGTTCATCGGTCTGGACGAACGGGCCGTGCTGGGAAGAAAGGAGCTGCTATTCTTGTTTACACACAAAATCAATTCAGGGATGTAAAGACTATTGAGCGTGATGTTGGGTGCAAATTTACAGAGCTACCAAAGATTGAAGTTCAAAGTGGATCAGCAGAAATGTTTGGTGGGATGAGTGGTGGTCGATTTGGCTCTTCAGGAGGCATGAGGGATCGTCATTCTGGAGGTACAGGTTTCGGTCGCAGTCCGGGATTTGGCCGTTCTGGGAGTTCCAGTAACTCTGGATTTGGTCGATCTAGCTATGGAAATTCCAGCGAGATGGGAAGGTCTGGAGGTCCAAATTCTAGCCGATTTGGCGGCCCTGGTTTGAGCCAGTCAGGAGGGGGTTTTGGAGGATTTGGTAGTTCAGATCGATCTGGCAGTTTTGGAGATTTTGGTGCATTTGGTGGCAAAAAGTCAAGCCAAAGCAGCACCTTTGGCAATTCACATGGTAGTGGTTTTGGGGATAACCGAAAGTCGTTTTAA 1779 0.4772 MTSVILRRSSSVFSRRFFAALASVEPIPHHLLRRRLAVLRHGLSGDGSRAFHAKSEPLNFRLSPVSRAAQLAVERDYDEEGCDANCDKGLEIAKLGISPEIVDALAKKGIAKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQINAKHGRGKDPLALVLAPTRELARQVEKEFNEAAPNLDMICLYGGMPIQQQIRQLNYGVDIAVGTPGRIIDLLNRGSLNLKDVKFVVLDEADQMLQVGFQEAVEKILERLSPNRQTLMFSATMPSWIRNLTRNYLNNPLTIDLVGDSDQKLADGISLFSIASDAYTKAGLLAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGAAILVYTQNQFRDVKTIERDVGCKFTELPKIEVQSGSAEMFGGMSGGRFGSSGGMRDRHSGGTGFGRSPGFGRSGSSSNSGFGRSSYGNSSEMGRSGGPNSSRFGGPGLSQSGGGFGGFGSSDRSGSFGDFGAFGGKKSSQSSTFGNSHGSGFGDNRKSF 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4953g00006 592 FunFam ATP-dependent RNA helicase RhlE 82 298 - -
Mupr4953g00006 592 SMART helicmild6 349 429 IPR001650 -
Mupr4953g00006 592 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 91 462 - -
Mupr4953g00006 592 MobiDBLite consensus disorder prediction 502 540 - -
Mupr4953g00006 592 MobiDBLite consensus disorder prediction 568 592 - -
Mupr4953g00006 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 450 IPR027417 -
Mupr4953g00006 592 CDD SF2_C_DEAD 321 438 - -
Mupr4953g00006 592 Pfam Helicase conserved C-terminal domain 326 429 IPR001650 -
Mupr4953g00006 592 Gene3D - 315 472 IPR027417 -
Mupr4953g00006 592 SMART ultradead3 109 312 IPR014001 -
Mupr4953g00006 592 CDD DEADc 101 296 - -
Mupr4953g00006 592 MobiDBLite consensus disorder prediction 474 592 - -
Mupr4953g00006 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 295 IPR014001 -
Mupr4953g00006 592 Gene3D - 91 299 IPR027417 -
Mupr4953g00006 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Mupr4953g00006 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 473 IPR001650 -
Mupr4953g00006 592 Pfam DEAD/DEAH box helicase 114 282 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4953g00006 Mupr-Chr4953 20219 26581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4953g00006 95 461 Eukaryotic Initiation Factors Gene Family AT3G19760 33.154 1.21e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4953g00006 - - gmx:100815635 827.78