Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4952g00003 ATGGAGGGAAAAAATGAGGATGAAGTCGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAATAGATGAAGTGCATCTTGAGGAGCCATTAACAGAAGAAGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAACTCTTCAGGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTACAAGTGGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGCTGGGTCTTTGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAACATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAGTTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAATTTTGTGATGAAACCCAGGAGCCAGTAAAGAAAGAAACTGAGGGGGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGAGTTGATACTTCATTTGGCAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAAAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAGTTGTTGATAGAAAACTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAAAAGTAAACAGGAAGGAACTAGCGATGGTGGGAAAATTGTGTCTGACAATGGCAAAGATACACGTGTGCTTATGGAGACTGATAAAATTGAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCCTATGAGTACCGGTGATTTGTCAGATCCTCCCAAATCTTCATCAGATGATGTTATTGAACATAGAGGAACCAAACGTGTAAACAGTGGTGAGCTTGATGCTGATAATAAAAAGTGTCGGATTGTTATTATTGACAGTGATAATGAAGCAGATGTCACTGAAGAGAAATTAGATTGCAATACTCAAAATGTAAAAGAAGATTTATGTAACAATGGTGCTGATTCACTTCCTTCAGAGCGTCTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACACCCTTTCTTGGAAGATATGGGACTGGGACAGGATTGTTCAGAGGGTTACTGTACATGGTGTGGAGGAAACAATGAATTAGTTAGTTGTAAATTATGCAAGACTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTCCTGAAGCTCAGGCCAGTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAGACTGTCCTTGCAACTAAAGAAAGCTATGGGGTCTACTGATATGATAGTTTCCAGTTCTAGCAGTGATTCAGATAATTCGGATGATTCTGACGATTCAGATGATTCAGATGCAGAGGTTAATGCTACAATCAGCTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATTCTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCAATTGAGATGAGCTCTGACGGCTGTAATGGGAATTTATCTGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAATTAAAGGCCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGCATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGCACTTATAGTCACGCCTGTAAACGTGCTACATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGGGCAGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGGCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGACACAACTCAAGCTTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCCCTTCAAAACAATCTCATGGAATATTACTGTAAAATATTGTTATTTATGTGCAGCTACCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTTACGGATGTGAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTTCAAAGAATGGATATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTTTCACCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGACATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTAACAAAAGAAGTCAAGGACTACGTAAAACACGAAGATGCCGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGATGAAAATTCTGATTATAATGTGCTTGCTGGAGAGAAGATGAGGTATGCAAATGACTTGCTGCCAAGGAAAGATGATAATGGCTTTTTTCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGCTTGATCACAGTGGCAAAATGGTTTTGCTTATGGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAACCGAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGGGTTCCGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACGTATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACAATGGAAGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTAGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGGGCATCAAGACAACCCAATTTTGGTTGGGCATTCACTGAAACATGCAGTACCGCATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAACATCATCCACGGTGGATTGCCAATTATCATGAACATGAGTCTCTGTTACAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCAGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATACCTGATCAAAAGCCAGAAATGCCAAATGCAATGCCCCAAGTATCAGAAACCCGCAGCATCTTGCCAAGTAAGCTAAGCAGACGTTTCATGACAAGGAAATGCACCAACCTTGCGCACATGTTGACACTTAGAAGCCAGGGAACAAAATTTGGTTGCAGTACCGTCTGTGGGGAATGTGCCCAGGAGATAAGGTGGGAAGACTTGAAGAAGAGATAG 4308 0.412 MEGKNEDEVVDIESASSGSFNDDSDDEESLVPEIDEVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQTLQGDDLETAVADEMTTLKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKWIEREAPNVCSTEAWKKRNHWAGSLATAEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKFCDETQEPVKKETEGDWDLFNKIVSDGSGVDTSFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSEEQKRQFKKVKEEDDAVVDRKLQIRLKHRRHQKKSKQEGTSDGGKIVSDNGKDTRVLMETDKIEGFDASHHLDKEKPMSTGDLSDPPKSSSDDVIEHRGTKRVNSGELDADNKKCRIVIIDSDNEADVTEEKLDCNTQNVKEDLCNNGADSLPSERLDEKFWCTVCDKVALEVHPHPFLEDMGLGQDCSEGYCTWCGGNNELVSCKLCKTLFCTKCLKKNLGVELVPEAQASSWHCCCCHPNLLQRLSLQLKKAMGSTDMIVSSSSSDSDNSDDSDDSDDSDAEVNATISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRVQFSASSIEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCKILLFMCSYQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPDMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANDLLPRKDDNGFFLKGWWNDLLHGKIYKELDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGNRGKFWKKGKDWYRLDGRTEGSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFELGDDDNPETLADLSQENGHQDNPILVGHSLKHAVPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESIIPDQKPEMPNAMPQVSETRSILPSKLSRRFMTRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4952g00003 1435 Coils Coil 290 310 - -
Mupr4952g00003 1435 Coils Coil 48 75 - -
Mupr4952g00003 1435 Gene3D - 658 928 IPR038718 -
Mupr4952g00003 1435 Gene3D - 939 1281 IPR027417 -
Mupr4952g00003 1435 Pfam SNF2-related domain 707 997 IPR000330 GO:0005524|GO:0140658
Mupr4952g00003 1435 PANTHER RAD54-LIKE 16 1433 IPR044574 GO:0016887
Mupr4952g00003 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1266 IPR027417 -
Mupr4952g00003 1435 SMART ultradead3 681 911 IPR014001 -
Mupr4952g00003 1435 MobiDBLite consensus disorder prediction 557 587 - -
Mupr4952g00003 1435 ProSiteProfiles ADD domain profile. 420 564 IPR025766 -
Mupr4952g00003 1435 Coils Coil 99 126 - -
Mupr4952g00003 1435 MobiDBLite consensus disorder prediction 1363 1382 - -
Mupr4952g00003 1435 MobiDBLite consensus disorder prediction 1 31 - -
Mupr4952g00003 1435 MobiDBLite consensus disorder prediction 318 399 - -
Mupr4952g00003 1435 SUPERFAMILY FYVE/PHD zinc finger 486 543 IPR011011 -
Mupr4952g00003 1435 SMART helicmild6 1105 1202 IPR001650 -
Mupr4952g00003 1435 Coils Coil 1318 1338 - -
Mupr4952g00003 1435 MobiDBLite consensus disorder prediction 345 378 - -
Mupr4952g00003 1435 Pfam Helicase conserved C-terminal domain 1078 1202 IPR001650 -
Mupr4952g00003 1435 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 707 890 IPR014001 -
Mupr4952g00003 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 928 IPR027417 -
Mupr4952g00003 1435 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1250 IPR001650 -
Mupr4952g00003 1435 CDD SF2_C_SNF 1070 1213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4952g00003 Mupr-Chr4952 47904 77304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4952g00003 715 1255 RAD5 or RAD16-like Gene Family AT5G43530 25.903 8.91e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr4952g00003 SNF2_N 8.2e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4952g00003 K10779 - gmx:100794911 2489.92