Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr494g00004 ATGGTGTCAGGATCGGGAATATGCGCGAAACGCGTGGTGGTGGACGCGCGGCACCACATGCTGGGTCGATTAGCGTCGATCGTGGCGAAGGAGCTGTTGAACGGTCAGAAAGTGGTGGTTGTGCGGTGCGAAGAGATTTGCATCTCCGGTGGTCTCGTCAGGCAGAAGATGAAGTACATGAGATTCCTCCGCAAACGCATGAACACTAAACCCTCTCACGGACCCATCCACTTCCGTGCCCCCTCCAAGATTTTCTGGCGCACTCTTCGCGGAATGATTCCTCACAAGACAAAACGTGGGGAAGCTGCTCTTTCTCGTTTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTTCCTGATGCGCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGCACTGTGTGCTGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATCAGGGAGATTTGCATACTTCTAGAGTTGGAGAAGAAGAGAAAAGAAAAAGCATCTCTGGTTTACGATAGAAAGAAGCAGTTGAACAAGTTAAGGGTGAAGGCCGAGAAGGTTGCTGATGAGAAGCTAGGTTCTCAACTTGATATTCTTGCTCCTGTTAAGGGAGGATCCTGGTCCTGTTTGAAGCTGCGTGTGGGGGAAATTGATTCACGTCTCTTAAAGTCTACTACAAGACTTAACTGGGATTAA 720 0.4889 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTLRGMIPHKTKRGEAALSRLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCVLGRLSSEVGWSYYDTIREICILLELEKKRKEKASLVYDRKKQLNKLRVKAEKVADEKLGSQLDILAPVKGGSWSCLKLRVGEIDSRLLKSTTRLNWD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr494g00004 239 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Mupr494g00004 239 PANTHER RIBOSOMAL PROTEIN L13 1 194 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 FunFam 60S ribosomal protein L13a-4 8 154 - -
Mupr494g00004 239 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 Gene3D - 163 211 - -
Mupr494g00004 239 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mupr494g00004 239 FunFam 60S ribosomal protein L13a 163 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr494g00004 Mupr-Chr494 27631 29433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr494g00004 1 211 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 85.782 4.39e-134 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr494g00004 K02872 - gmx:100813340 389.037