Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr494g00003 ATGTCTTCTTCTACTCATGACCTCTCAGATAATGAAGCTGATGAGCAGCACCAGTCAGAATCACAAATGCTGCCTTTATCTGCAAATGGAATTTCTCATGCAAGTATTGGTACTCAGAATGTGCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTGTGGCACCGCCCACTTACCCATATCCAGATCCGTACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCATATGGTGGAAATCCAATGGTCCAACTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGGTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGAGTTTGCGCCTTCGGGATAG 609 0.4286 MSSSTHDLSDNEADEQHQSESQMLPLSANGISHASIGTQNVQYATPPQLGTGHAVAPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVQLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKGARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSNINLNSDKNEFAPSG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr494g00003 202 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 MobiDBLite consensus disorder prediction 1 31 - -
Mupr494g00003 202 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Mupr494g00003 202 MobiDBLite consensus disorder prediction 163 202 - -
Mupr494g00003 202 Gene3D - 109 170 - -
Mupr494g00003 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 MobiDBLite consensus disorder prediction 126 148 - -
Mupr494g00003 202 MobiDBLite consensus disorder prediction 180 202 - -
Mupr494g00003 202 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 196 IPR001289 GO:0003700|GO:0006355
Mupr494g00003 202 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr494g00003 Mupr-Chr494 19402 23714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr494g00003 1 201 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.158 7.33e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr494g00003 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr494g00003 K08064 - gmx:100809036 377.481