Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4929g00014 ATGACACGTTATTTTGGGTTTGTTGTGCTGCTTTCTCTCTCTTCTGTTTCTGGCTTTGTGGTGATTGTTGAGGGCAGAAGCAAAGTGAACTTGTGGTTTAAGGTTTCTAGTGAAAGAGAAAGGATGTCAAGTGGAGCAACATACTGGTGCTATACATGCAGGCAGGGGATCTTGCTTTCAGGGAGGGGTGCCATTTGCCCATACTGCGAGGAAGGCTTTGTGCAAGAACTCAACGAGATGCGAGGAGGTGCACCACAGCACGGCTTTTCATCATCGCGGTTGGAAGATTTCCATCAAGTGCCTGACATCATGGATGCCATACGAGCTGTTATGGAGCAAAGAGGTTCTGAATCAAGAATTGGAGTTAGAGATGCTGTTGACAACTTCATGAGGCAGAGAATGGCTGGAAGGTACACAAACTTTGATGTTAGAAGGAGGTCTGGTTCCACCCCACTTCCTGATCAAACTTGGGGTGTCTTCAGTTCTGGTCCTTATTTGATATTCCACGGTCAAGCTCCCGGGTTTGCCTTGTCCAATGGTGGCTCAAGAGGCGGTCCCCGGCGTGTTGATTTTGGTGAGTACTTTCTGGGCCCTAGACTGGAAGGACTCATTGAACAACATGTTGGGAATGACCGGCTTGGTCCACCCCCTGCATCACGGTCTTCAATTGATGCTATGCCAACTATTAAGATCACAAATGAACACCTCCACTCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAGCTGGGTTCTGAGGCCAGGAAGATGCCATGTAACCACATTTACCACTCGGACTGCATTGTTCCATGGTTGGTTCAGCATAATTCATGTCCCGTTTGCCGGGTTGAGCTGCCGCCTCAAGGACATGGTAGTTCTCGTGGTAGTCGAATTTGGGGAAGAAGGAATGACAATAATGGTAATGGTGACAATGATATCTCTAGGGGAAGGGAGAATAGACAGATTAACAATGGAAGGAGAAATCTGCTGTCATTTTTGTGGCCATTTCGTTCTTCTAGTTCAAGTACTTGA 1035 0.4686 MTRYFGFVVLLSLSSVSGFVVIVEGRSKVNLWFKVSSERERMSSGATYWCYTCRQGILLSGRGAICPYCEEGFVQELNEMRGGAPQHGFSSSRLEDFHQVPDIMDAIRAVMEQRGSESRIGVRDAVDNFMRQRMAGRYTNFDVRRRSGSTPLPDQTWGVFSSGPYLIFHGQAPGFALSNGGSRGGPRRVDFGEYFLGPRLEGLIEQHVGNDRLGPPPASRSSIDAMPTIKITNEHLHSDSHCPVCKERFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHGSSRGSRIWGRRNDNNGNGDNDISRGRENRQINNGRRNLLSFLWPFRSSSSST 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4929g00014 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 289 IPR013083 -
Mupr4929g00014 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 164 287 - -
Mupr4929g00014 344 SMART ring_2 242 282 IPR001841 -
Mupr4929g00014 344 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Mupr4929g00014 344 Pfam zinc-ribbon 47 77 IPR039525 GO:0061630
Mupr4929g00014 344 FunFam E3 ubiquitin-protein ligase RING1-like 205 289 - -
Mupr4929g00014 344 Pfam Ring finger domain 241 283 IPR001841 -
Mupr4929g00014 344 SUPERFAMILY RING/U-box 222 290 - -
Mupr4929g00014 344 CDD RING-H2_RNF126-like 242 283 - -
Mupr4929g00014 344 MobiDBLite consensus disorder prediction 287 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4929g00014 Mupr-Chr4929 34356 37245 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4929g00014 212 338 C3H Transcription Factor Family AT1G68180 41.732 5.50e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4929g00014 K11982 - ccaj:109790507 524.628