Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4929g00005 ATGGAAGCAACAAACTGGTGTTACTCATGCTTGCAGCCAATCGAGTTTGGAGGGATGAATGATTCCGCTTGCCCTTACTGCAATGATATCTTCGTGCCACAACCTAGTGACTTGCAACTTATTATGGAGCAAAGAGGTTCTGAAGCAAGAAATTGGTTTACAGATGCTGTTGATAACTTAATGAGGCATACAATGTGTGGAGCATTCATAATAAGATTTGGTGTAATTGCAAGGCCTGGTTCTAGCCTATTTCCTGAACTGGCATGGGGTGCTTGTATTTCATTATTTTATGGTAATGGCTTAAGATTTGGTAATAGACTTCAAGACTTCATGGAACAAGACAATGCAAATCACCAGCTTGGTGCGTCACAATCTTCAATTGATGCAATTCCAACTATTGAGATCACATATGAACACCTCAACAATTATTCAAAGTGTCCAGTTTGTATGGAAAGATTTGAAGTTGGTTGTGAGGCAAGGAAGATGCCTTGTGATCACATTTACCACTCAGACTGCATTGTTCAATGGTTAGTTCGGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGAAATGTTAGTTTTCGTGGAGAAAGGAATGATGATGGTGGTAGTGATAATAATGATGTCTCCAGAGAAGCTTTCACCTTTTTGCATAGTATCAACGACTTTATAGTAACAGGTAGTAGTATAGTACCATTGATTGGCTTAGCATCAATTTGTTGA 735 0.3959 MEATNWCYSCLQPIEFGGMNDSACPYCNDIFVPQPSDLQLIMEQRGSEARNWFTDAVDNLMRHTMCGAFIIRFGVIARPGSSLFPELAWGACISLFYGNGLRFGNRLQDFMEQDNANHQLGASQSSIDAIPTIEITYEHLNNYSKCPVCMERFEVGCEARKMPCDHIYHSDCIVQWLVRHNSCPVCRVELPPQGNVSFRGERNDDGGSDNNDVSREAFTFLHSINDFIVTGSSIVPLIGLASIC 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4929g00005 244 SMART ring_2 146 186 IPR001841 -
Mupr4929g00005 244 SUPERFAMILY RING/U-box 127 193 - -
Mupr4929g00005 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 193 IPR013083 -
Mupr4929g00005 244 FunFam E3 ubiquitin-protein ligase RING1-like 109 193 - -
Mupr4929g00005 244 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Mupr4929g00005 244 Pfam Ring finger domain 145 187 IPR001841 -
Mupr4929g00005 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4929g00005 Mupr-Chr4929 16829 18564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4929g00005 122 215 C3H Transcription Factor Family AT1G68180 46.809 3.39e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4929g00005 K11982 - ccaj:109790507 206.068