Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4913g00010 ATGCAAAGAGAATTAGGCTTGTCTTGTGTTGCATGCATGTACTTTGGTCTTGTCTCACTTTCTCATACCCAATGGGAAGTGTCCACTTATCAAACTGAAGTTTTTGAAGTTGCAAAACTGAGGAACACCATTGCAGTGCTGGATACTGGTGCTGGAAAGACCATGATTGCTGTGATGCTTATTAAACATATTGGACAATTTATCAAGTCCACTGATGAAAAGAGATTGATTATTTTCTTGGCTCCCACTGTCCATCTTGTAAATCAGAAACCGGGTAGACGGGTACAGCCAGTGGCGCTGGCTCTTCTCCAATCTCCACAAAAGAGCCAACCAAGAGAGAAAAAACCCACTGACGGCAGAACAGAGATGCTAAAATGTTTTGCATTATATGGCCTGAAGATATTGAGCATATGGTCTTTCTATTTGCAGCAATTTGGGGTTATCAAGGACTACACAGATCTGGCAGTAGAAGAATACTATGGAGCCAAGGGAATAGATGACTGGAATTTAAGTTGCTGGGAAAAGGAAATTGAAGAACATGATGTGATGGTGATGACACCACAAATTCTCTTGGATAGCCTCAGAAAGGCATTCTTCAAGATGGAAACAGTCAGCTTGTTGGTTATTGATGAATGCCATCGTGCTAGTGGGAACCACCCTTATGCTAAAATAATGAAGGAATTTTACCACACATCTGGTAACAAGCCAAAGATTTTTGGAATGACGGCATCACCAGTAGCTGGAAAGGTTGTCTCTTCCACTATGGACTGCAAGGTTCAGATATCTAAGCTCGAAAGCATTTTAGATTCTCAGATTTTTGCTATTAAAGATAGGACAGAGTTGGAACTATGTGTGCCCTATGCTATGGAAAATTGTAGGTTCTATAATCAAGCACAATTTCTCAACAATGACTTGAAATTAATGATGGAAGGTTTATGGTCTCAGTTTGATGCTTCATTGCTAAGATTGCAACAGTCAGTGGAATGTCAATACAAAGACATTGATGATAAACTTGGAAAACTGCGGAAGAGATTGTTCAATGACTATTCAAAGATTTTGTATTGTCTTGATGATCTTGGCCTTGTATGTGCTTATGAGGCAGTAGAATTGGGATACATGTCTCCAAAATTACATGAATTAATACAAATGTTTAAATCATTTGGAGAAAGTAACGATGTTCTGTGCCTCATATTTGTTGAAAGAATTGTCACCGCAAAAGTCATTGACAGTTTTGTGAAGAAAGTTAAGTTCTTGTCCCATTTTACAGTCTCATATTTGACTGGAAGCAATACATCTGCCGGTTCACTAGCACCAAAGGAGCAGAAAGAAATCTTGCAGCTTTTTTCCAATGGAAAGGTCAATCTACTATTTGCCACTGATGTTGTTGAGGAAGGAATTCATGTGCCAAATTGCTCCTGTGTAATACGATTTGATCCGCCCAAGACAATTCGCAGCTATGTCCAATCAAGGGGACGAGCACGACAAATTTTGAAGCTCTACAGGGAAAATGTGAAGCAAAGGGATCAGTTGTTTGATATTATTAGGAGTGAATATTCAATGAGAAATACAGCAAAAAACAGAGAACAAGAGGCATTTAGTTTGGAAACTTACGGAACTGAGAAGACATGTGCTTATTATGTTGATGCAACTGGTGCATGTGTCACAGCCGATTCTAGTGTCAGTCTCATCCATAGATATTGTGAAAAGTTGCCTGGTGATAAGTATGAATACTCGAAATACTTTTTTCCCAAACCAATATTCCAGTTCTCAAATTCTGGTGGGCATTATGAATGTAAATTAATATTGCCTCCTACGTCACCTTTTCAAACATTAATGGGTCCCCCGAGTGCAAATTCTCATTTATCAAAGCAGCTTGTATGCTTGGAGGCATGTAAGAAGCTGCATGAGATGGGTGCTCTTAATGATCATCTTCTACCCTTTTCAGAAGAGCCACCAGAAAGTAATATGAGCTTGAATTGGAAAAAGTCACCGCCAGGTGAAGGAACAACCAAAAGAAAGGAATTACATGGGACAGTATGCATTCATGCACTATCTGGAGCTTGGGCTTTAAGTCAAAACGGGGCCACTTTTCATGCCTATAAATTTGATTTCTCTTGTAACACTGAAGAGATTTATTCCAGATTTGTCCTTCTGATTGGTTCAAAACTAGACAATGATGTAGGAAATATCAAGAGAGATCTTTACTTGATCTCAAAGACAGTTACGTCTCATGTCTCTCCATGTGGAGAACTGTATTTGGATTCAGAACAGATGACGCAGGCTAAGTGCTTTCAGGAACTTTTCTTTAATGGTTTATTTGGAAGACTTTTTGTTGAATCAGAAGAAGCTGGCACAAAGAGGGAATTTTTGCTTCAGAATCAAATAAGTGATCTATGGAACCCATTAAAAATGTATTTGCTTTTACCACTTGAGGCATTGAATAGTGAAGGTGAAGCCTGGAGAGTAAACTGGAGAGGAGTGAGCTCTTGTGTGTCAGTGGTAAATTTTTTGAAAAGAAAATTCTCGTTGAGTTCTGAGAATTGTCCCAAACAAAAGTTTTCAAAATGGATTGATTCATCTGATATGGAACAGAAGACCTCAAGTACAGTCCATTTTGCTAATTGTCTGCTTGATGTTAATGCTATCAAAGATGTGGTGGTGATGGCTATTCACACTGGAAGGTTCTACTCTATTGTTGGGATTGTAAAATATTCATCTGCAGAGTGTCTTTTCAGTTACAATGGGGCTGATGTGGCTTCATCATCAGATTATAGTACCTACATTGAATACTTCAACAAAAAGTATGGGATTGTGCTGATGTATCCAGGACAGCCTTTGCTGCGGTTAAAGCAGAGTCATAACCCACATAATCTTCTAGTGAAATTCAGTGGAGATGCCCAGGTTCAGGAAAAAACACAAGTCCATGCTTATATGCCACCTGAGGTTTTAATAAGAATTGATGTTACAAAAGAAGTTCTGAAGTCAATTTACTTACTTCCATCATTAATGTACCACTTAGAATCCTTGATGCTAGCAAGCCAGCTAAGAAAGGAGATTGATTTAGATACTGACAGATTTCATATATCAAGTTCATTGATTCTTGAAGCATTGACGACATTAAAATGCTGTGAAAGTTTCTCAATGGAGCGTCTGGAATTGCTTGGAGATTCTATTTTAAAGTATGCAGTGAGCTGCCACCTTTTCCTTAGATATTCGGAGAAACATGAAGGGCAATTATCTGATTGGCGTTCATCTTTAACTTCTAATTCGGCCCTGCATAGATTGGGAATAGAGTGCAAATTACAGGGATATATACGTGACAGTGCTTTTGAACCACGTCGCTGGGTAGCTCCAGGGCAGCATTGTATACACCCTATTCCTTGTGGATGTGGGGTGGATACTTTTGAAGTACCTTTGGATAAAAAATTCCAAACAGATAACACAAAAGTTAAGATTGGAAAGTGCTGTGACAAAGGGCATAGATGGATGTGTTCAAAAACCATAGCTGATTGTGTTGAAGCCCTCATAGGAGCTTATTATGTTGGGGGTGGGCTTACTGCTGCACTTCATGTAATGCAGTGGCTGGGTATGAATGTTGGGCTTGATTCACCATTGGTACATGATGCCATTACCAGGGCATCATTAAGGTTATATGTCCCAAAAGCTAATGATATCAAAGCCTTGGAACTAAAGCTTGGTTATGAATTTTCCACTAAGGGTTTGTTATTGGAGGCCATGACACATCCATCTCAGCAAGAGCTGGAACCGGGAATTTGTTATTGTTACCAGAGGCTTGAATTTCTAGGTGATTCAGTGTTGGGATTTCTAATTACACGACATCTTTATGAAAGCTACCCACATATTGATCCTGGCTTGTTGACTGATTTACGGTCTGAAGCTGTTAGCAATGAAAACTTTGCTCAATGCTGTGTAAGAAGGAACCTCCAACCACATCTTCAGCACTGTTCTGGGATTCTTCAAAGTCAAGTAACAAAATTCATGAGTTCAATAGCTGAAACTAAGAACACCTCCAAATTAAGAATAAAAGCTCCGAAGGTTCTTGGAGACATGGTGGAAAGCATTGCAGGGGCTATGCTCATTGATACCAAGCTTGATATTGAGAAAGTGTGGAAAACCTTTCAACCATTATTGTCTCCAATTGTGACCCCTGACAATCTTGAACTTCCTCCTCTCTGTAAACTGAATAAGTTGTGTGATCGTCTTGGATACTTTATAAAAGAGATCTGCACGAAAGAGGGGGAAATTCATCATGTTGAACTTCAATTGCAGCTGGAAGATTTCCTTTTGGTAGGAAGAGGAAGTGAGAAAAACAAAAGAAGAGCAAAAGGAGAAGCGGCACATTGTTTGTTAGAGGAACTTGAGAGGAGAAAACATGTTTTCGACGATGTTGGCATTTCATCTTCACTGGACATGGGAGTCAGTAATCCATTAACTGATGAAGATTCTCTTAGAAACAGAAAGCAAAAGAATGGAAGTGATTGCCCAGCAGAGTCAACTGAAGATTCTTTCCCACTCAATGACTGTTCGAAGAAAACCTGCAGTATTAGTTCCACCCCACCAGTTATTGGATCAATTGACATGAAGAAAGGAGGACCACGAACATCAATTTATAGTATATGCAAGACATTACACTGGCCACTGCCAAAATTCATTTGCAAAGAAACTAAATCCATAACCCCAATGGAATTTGGTGAAGGCTATGGGGAAAGAATTGGTTTCAACAGTTTTGTGTCCAATATCATCTTGCAGATACCCAACTCAGGCATCATTGAGTGTACAGGAGATCCCAAAGCTGATAAGAAGAGTTCATTTGACTCTGCAGCAATTGCCCTGCTTTATGAACTTGAGCAACAAAAAAGGATAGTTATTGTTAAGCCTTAA 4902 0.3927 MQRELGLSCVACMYFGLVSLSHTQWEVSTYQTEVFEVAKLRNTIAVLDTGAGKTMIAVMLIKHIGQFIKSTDEKRLIIFLAPTVHLVNQKPGRRVQPVALALLQSPQKSQPREKKPTDGRTEMLKCFALYGLKILSIWSFYLQQFGVIKDYTDLAVEEYYGAKGIDDWNLSCWEKEIEEHDVMVMTPQILLDSLRKAFFKMETVSLLVIDECHRASGNHPYAKIMKEFYHTSGNKPKIFGMTASPVAGKVVSSTMDCKVQISKLESILDSQIFAIKDRTELELCVPYAMENCRFYNQAQFLNNDLKLMMEGLWSQFDASLLRLQQSVECQYKDIDDKLGKLRKRLFNDYSKILYCLDDLGLVCAYEAVELGYMSPKLHELIQMFKSFGESNDVLCLIFVERIVTAKVIDSFVKKVKFLSHFTVSYLTGSNTSAGSLAPKEQKEILQLFSNGKVNLLFATDVVEEGIHVPNCSCVIRFDPPKTIRSYVQSRGRARQILKLYRENVKQRDQLFDIIRSEYSMRNTAKNREQEAFSLETYGTEKTCAYYVDATGACVTADSSVSLIHRYCEKLPGDKYEYSKYFFPKPIFQFSNSGGHYECKLILPPTSPFQTLMGPPSANSHLSKQLVCLEACKKLHEMGALNDHLLPFSEEPPESNMSLNWKKSPPGEGTTKRKELHGTVCIHALSGAWALSQNGATFHAYKFDFSCNTEEIYSRFVLLIGSKLDNDVGNIKRDLYLISKTVTSHVSPCGELYLDSEQMTQAKCFQELFFNGLFGRLFVESEEAGTKREFLLQNQISDLWNPLKMYLLLPLEALNSEGEAWRVNWRGVSSCVSVVNFLKRKFSLSSENCPKQKFSKWIDSSDMEQKTSSTVHFANCLLDVNAIKDVVVMAIHTGRFYSIVGIVKYSSAECLFSYNGADVASSSDYSTYIEYFNKKYGIVLMYPGQPLLRLKQSHNPHNLLVKFSGDAQVQEKTQVHAYMPPEVLIRIDVTKEVLKSIYLLPSLMYHLESLMLASQLRKEIDLDTDRFHISSSLILEALTTLKCCESFSMERLELLGDSILKYAVSCHLFLRYSEKHEGQLSDWRSSLTSNSALHRLGIECKLQGYIRDSAFEPRRWVAPGQHCIHPIPCGCGVDTFEVPLDKKFQTDNTKVKIGKCCDKGHRWMCSKTIADCVEALIGAYYVGGGLTAALHVMQWLGMNVGLDSPLVHDAITRASLRLYVPKANDIKALELKLGYEFSTKGLLLEAMTHPSQQELEPGICYCYQRLEFLGDSVLGFLITRHLYESYPHIDPGLLTDLRSEAVSNENFAQCCVRRNLQPHLQHCSGILQSQVTKFMSSIAETKNTSKLRIKAPKVLGDMVESIAGAMLIDTKLDIEKVWKTFQPLLSPIVTPDNLELPPLCKLNKLCDRLGYFIKEICTKEGEIHHVELQLQLEDFLLVGRGSEKNKRRAKGEAAHCLLEELERRKHVFDDVGISSSLDMGVSNPLTDEDSLRNRKQKNGSDCPAESTEDSFPLNDCSKKTCSISSTPPVIGSIDMKKGGPRTSIYSICKTLHWPLPKFICKETKSITPMEFGEGYGERIGFNSFVSNIILQIPNSGIIECTGDPKADKKSSFDSAAIALLYELEQQKRIVIVKP 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4913g00010 1633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 263 IPR014001 -
Mupr4913g00010 1633 CDD RIBOc 1031 1195 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 538 IPR001650 -
Mupr4913g00010 1633 Pfam PAZ domain 878 1008 IPR003100 GO:0005515
Mupr4913g00010 1633 SUPERFAMILY PAZ domain 878 983 IPR036085 GO:0005515
Mupr4913g00010 1633 Gene3D Ribonuclease III domain 1218 1390 IPR036389 GO:0004525|GO:0006396
Mupr4913g00010 1633 Gene3D Ribonuclease III domain 1013 1197 IPR036389 GO:0004525|GO:0006396
Mupr4913g00010 1633 ProSiteProfiles Ribonuclease III family domain profile. 1012 1184 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 ProSiteProfiles PAZ domain profile. 882 987 IPR003100 GO:0005515
Mupr4913g00010 1633 Gene3D - 1545 1624 - -
Mupr4913g00010 1633 SMART PAZ_2_a_3 856 1011 IPR003100 GO:0005515
Mupr4913g00010 1633 Gene3D - 365 512 IPR027417 -
Mupr4913g00010 1633 Pfam Ribonuclease III domain 1263 1369 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 Pfam Ribonuclease III domain 1049 1183 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 Gene3D - 138 313 IPR027417 -
Mupr4913g00010 1633 Pfam Type III restriction enzyme, res subunit 20 245 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mupr4913g00010 1633 FunFam Endoribonuclease dicer-like 1 554 655 - -
Mupr4913g00010 1633 Pfam Dicer dimerisation domain 559 650 - -
Mupr4913g00010 1633 CDD DEXHc_dicer 30 277 - -
Mupr4913g00010 1633 Gene3D Dicer dimerisation domain 554 657 IPR038248 -
Mupr4913g00010 1633 PANTHER DICER-RELATED 41 1464 - -
Mupr4913g00010 1633 MobiDBLite consensus disorder prediction 1478 1510 - -
Mupr4913g00010 1633 FunFam Dicer-like 104 1007 1196 - -
Mupr4913g00010 1633 Gene3D paz domain 865 984 - -
Mupr4913g00010 1633 ProSiteProfiles Ribonuclease III family domain profile. 1225 1370 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 Pfam Helicase conserved C-terminal domain 389 493 IPR001650 -
Mupr4913g00010 1633 CDD RIBOc 1241 1393 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 FunFam Endoribonuclease dicer-like 1 1219 1391 - -
Mupr4913g00010 1633 ProSitePatterns Ribonuclease III family signature. 1263 1271 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 90 IPR027417 -
Mupr4913g00010 1633 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 559 654 IPR005034 GO:0016891
Mupr4913g00010 1633 SUPERFAMILY RNase III domain-like 1007 1202 IPR036389 GO:0004525|GO:0006396
Mupr4913g00010 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 493 IPR027417 -
Mupr4913g00010 1633 Gene3D - 21 114 IPR027417 -
Mupr4913g00010 1633 MobiDBLite consensus disorder prediction 1487 1501 - -
Mupr4913g00010 1633 SMART helicmild6 409 496 IPR001650 -
Mupr4913g00010 1633 SMART ultradead3 23 270 IPR014001 -
Mupr4913g00010 1633 SUPERFAMILY RNase III domain-like 1224 1390 IPR036389 GO:0004525|GO:0006396
Mupr4913g00010 1633 SMART riboneu5 1031 1204 IPR000999 GO:0004525|GO:0006396
Mupr4913g00010 1633 SMART riboneu5 1240 1393 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4913g00010 Mupr-Chr4913 67192 83668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4913g00010 392 493 Eukaryotic Initiation Factors Gene Family AT3G19760 32.039 7.21e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4913g00010 K11592 - cave:132188155 1845.09