Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4904g00002 ATGAAAAACTCAGCATTTTTCCTTTATCTTCCACACATGGTCACTATCATGACCAGAAAGAAGGTGGAACTTACATATATAACCAATGACTCGAAGAGGAAGACAACGTTAAGGAAAAGGAAGACTGGTTTGATCAAGAAGATTGGTGAAATCAGTGTCCTTTGTGGAGTTGAAGCGTGTGCTATAATTTATACTCCAAATAACCCTCAGCCAGAGGTTTGGCCATCTAACTCAGGACTCCAAAGTGTGCTTTCGAGGTTCAGGGGAGTATCTGAACTGGAACAAAGCAAAAAAATGTTGAGTCAAGAGAGCTTTATGAGGAAGACGGTCATCAAAGCCCAAGAGCAGCTTAAGAAACTCAAGTATGATAATAGGAAGAAAGAGATGACAATTCACATGTTTCATCACTTCAATGGTGGGAACATTTTTGATAATGCCAACATGATTGATCTGAATGATATCGCATACTTGACTTATCAAAAATTAGAGGAAATAAAAATGAATATGAATATGATCCAAGCCCAGGAGGTGACACCAGTTGTTGAAAATGGAGGAGAAATAATGACTCAAGGAGAGCAAGCAGTTGTGAATCCTGTCCAAGGGCCCGAGACCAATGTGGATATCATGGAAACACTCAATTGGTGTATGGACATCATTAATGGTGGTGGTGAGGATGACATGTTTACATTCGAAGATGTTGATGTTCAAAGTGGTTTGATCAAGAAGATTGGTGAAATCAGCGTCCTTTGTGGAATTGAAGCATGTGCCATAATTTATACTCCAAATAACCCTCAGCCAGAAGTTTGGCCATCTGACACGGGAGTGCAAACTGTGCTTTCCAAGTTCAAGAAAGTAACTGAACTGGAACAAAGCAAAAAAATGTTGATTCAAGAGGGCATTTTGAGGAAGACGGTAATCAAAGCCCAAGATCAGCTGAAGAAACTCAAGTATGAAAATAGGAAGAAAGAGATGACAATTCACATGTTTCAACACTTCAATGCTGGGAACAACTTTGGCAATGCTGACATAATTGATCTGAATGATATCTCATACATGACTGATCAAAACTTGGAGGAAATACACATGAAAATTAATATGAGCCAAGCCCAAGAGGTGACACCACTTGTTCAAAATGGTGGTGGTGGTGATTAG 1152 0.3941 MKNSAFFLYLPHMVTIMTRKKVELTYITNDSKRKTTLRKRKTGLIKKIGEISVLCGVEACAIIYTPNNPQPEVWPSNSGLQSVLSRFRGVSELEQSKKMLSQESFMRKTVIKAQEQLKKLKYDNRKKEMTIHMFHHFNGGNIFDNANMIDLNDIAYLTYQKLEEIKMNMNMIQAQEVTPVVENGGEIMTQGEQAVVNPVQGPETNVDIMETLNWCMDIINGGGEDDMFTFEDVDVQSGLIKKIGEISVLCGIEACAIIYTPNNPQPEVWPSDTGVQTVLSKFKKVTELEQSKKMLIQEGILRKTVIKAQDQLKKLKYENRKKEMTIHMFQHFNAGNNFGNADIIDLNDISYMTDQNLEEIHMKINMSQAQEVTPLVQNGGGGD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4904g00002 383 SUPERFAMILY SRF-like 237 303 IPR036879 GO:0003677|GO:0046983
Mupr4904g00002 383 CDD MADS_SRF_like 237 294 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr4904g00002 383 Gene3D - 29 112 IPR036879 GO:0003677|GO:0046983
Mupr4904g00002 383 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 68 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 237 263 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 FunFam Agamous-like MADS-box protein AGL80 229 309 - -
Mupr4904g00002 383 PANTHER MADS BOX PROTEIN 19 169 - -
Mupr4904g00002 383 SUPERFAMILY SRF-like 18 110 IPR036879 GO:0003677|GO:0046983
Mupr4904g00002 383 CDD MADS_SRF_like 18 99 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr4904g00002 383 ProSiteProfiles MADS-box domain profile. 17 68 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 Gene3D - 236 303 IPR036879 GO:0003677|GO:0046983
Mupr4904g00002 383 FunFam agamous-like MADS-box protein AGL80 29 113 - -
Mupr4904g00002 383 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 SMART madsneu2 220 271 IPR002100 GO:0003677|GO:0046983
Mupr4904g00002 383 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4904g00002 Mupr-Chr4904 10920 19150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4904g00002 243 364 Type I MADS-box Gene Family AT5G48670 44.262 8.40e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr4904g00002 SRF-TF 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4904g00002 - - gmx:102667813 261.922