LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr489g00014	ATGAACCGAATCGATGACAACTCTCCCAAACCGTTGGAGATTCTGCAGATTCCGCCATTTCTGTCCAAGACTTTCGACCTCGTCGATGACTCCACTCTGGACCCGATTATCTCGTGGGGCTCCACCGGCTTTAGCTTCGTCGTGTGGGACCCTCTCGAGTTTTCTAGACTCGTCTTGCCGCGTCATTTCAAGCACAACAATTTTTCCAGCTTCGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCTTTCCAGCGAGGGAAGAAGCACTTGTTGAAGAACATCCAAAGGCGCAAGTCACCTCAATCCCAGCAGGTTGATAGCTATATTGGACTTGGATCTTCTACTGATGCAGGGAGGCCTGATGTTGAGCTTGAGATAGAAATGCTGAAGAAAGAAAGAAGTATGTTAATGGAAGAGGTGGTTAATTTGCAACAGCAACAACGAAGAACGGTTCACCGTGCAGGAGAAGTGAATCAAAGACTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTTTTAGCCAAGTTGTTCCAAAATCCAGCCTTTTTAGCCCGTCTTAGGCATAAGAAGGAGCAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCATCAACATGAAACTGAAAAAGCAGAAGCTCTCAAAGAAGGACAGATAGTGAGATACCAACCTGATTGGACAAATATAGGCATGTCTTGTGAAACTCCAGAACTAAGTCCAGTTTCCATTGATCATTCTCCTCACTACCCTTCACAGGGTTTGGCAGGAGAAATGAGTGTAGGAGCAGAAGATCTGACTGCTCAATTTGAGAATATTGTATCATATGATTTGGCTGCAGTGCACGGGATTACACCCTCTCAAGAAATGATTGGAGAAGGATCATCTAGCTTTGGACTTGAAGACCCCCTTTTCAAAGGGAAAAGTGTTTTGAGCCCAAATCTAGAAGTTCCTCTAGAGCATGTTGCTTCCTTCCCAGAGACTTTGACCAAGGAGAAAGGCTTTCTAGATTTTTCTGCTCTTGGAACTGAAGGCATTATCAAGCTAGAAGATATATGGGAATCTGGCCTCAATGTTAGTGGTGCTGCTTCAAGCTGTGGGAATGAGCTGTGGGGCAATCCTATCAATTATGAAGATGTTCTAGAATTTGGAATCACAAGTGGTATGTCTGAGTCAGACATGTGGGATATTACAGCAAGTTTGGGAATTGACCAGTGTCCAGCTGATGAACCTTCTCTTGATGAAACATATGGTCAGCCAAAAGAAGATAGGCCTAAGAATGTTGATCCATAG	1344	0.439	MNRIDDNSPKPLEILQIPPFLSKTFDLVDDSTLDPIISWGSTGFSFVVWDPLEFSRLVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRKSPQSQQVDSYIGLGSSTDAGRPDVELEIEMLKKERSMLMEEVVNLQQQQRRTVHRAGEVNQRLQSAEQRQKQMVSFLAKLFQNPAFLARLRHKKEQREIDSPRVVRKFVKQHQHETEKAEALKEGQIVRYQPDWTNIGMSCETPELSPVSIDHSPHYPSQGLAGEMSVGAEDLTAQFENIVSYDLAAVHGITPSQEMIGEGSSSFGLEDPLFKGKSVLSPNLEVPLEHVASFPETLTKEKGFLDFSALGTEGIIKLEDIWESGLNVSGAASSCGNELWGNPINYEDVLEFGITSGMSESDMWDITASLGIDQCPADEPSLDETYGQPKEDRPKNVDP	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr489g00014	447	PRINTS	Heat shock factor (HSF) domain signature	20	43	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	PRINTS	Heat shock factor (HSF) domain signature	58	70	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	FunFam	Heat stress transcription factor B-4	13	110	-	-
	Mupr489g00014	447	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	16	226	IPR027725	-
	Mupr489g00014	447	Pfam	HSF-type DNA-binding	20	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	MobiDBLite	consensus disorder prediction	432	447	-	-
	Mupr489g00014	447	Coils	Coil	138	158	-	-
	Mupr489g00014	447	SUPERFAMILY	"Winged helix" DNA-binding domain	16	109	IPR036390	-
	Mupr489g00014	447	Gene3D	-	14	110	IPR036388	-
	Mupr489g00014	447	ProSitePatterns	HSF-type DNA-binding domain signature.	59	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	SMART	hsfneu3	16	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr489g00014	447	MobiDBLite	consensus disorder prediction	422	447	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr489g00014	Mupr-Chr489	96942	99649	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr489g00014	9	440	HSF	AT5G03720	43.919	1.66e-98	299

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr489g00014		HSF_DNA-bind	1.1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr489g00014	K09419		-	gmx:100780835	716.842