Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr486g00008 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATTACTGTTCTATGTGATGCCCAAGTTTCCCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCCACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACAGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAGGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTCATGGATGTATACAGGATGTTCCGGAGAAATGACAAAATCTTGGAGGAGGAGAACAGGGAACTTAACTTTCTCTGG 471 0.4522 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNSEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLMDVYRMFRRNDKILEEENRELNFLW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr486g00008 157 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mupr486g00008 157 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 136 - -
Mupr486g00008 157 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mupr486g00008 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 Coils Coil 77 111 - -
Mupr486g00008 157 ProSiteProfiles K-box domain profile. 84 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr486g00008 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr486g00008 157 Pfam K-box region 82 136 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr486g00008 157 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr486g00008 Mupr-Chr486 56621 58572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr486g00008 1 132 MADS-box Gene Family AT5G20240 71.970 1.05e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr486g00008 K-box 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr486g00008 K09264 - gmx:100817554 301.212