Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr486g00004 ATGAGATGTCATAACTGTCGGAATGTTGGTCATTATGCAAGAGAATGTTGGGCAGGAGAAGGTGCCAAGAACAAACCTAACAATCATGCACACCTGGCACAAGATGAAGGGACAGATTCTGAAGCTGTGGTGCTTCTGACAATCACAAGCAATGAAGCTCAGCCAAGGATACCAATAGAAGAAGAACTCATAGCGACACCAGTATTTAACAAAGCTTCTGTTGTAAGAAGACCATTACAGTCAAGGGACCAAGAGTTGCTGTTCCAGGATTCAACAGTCAACTTAGAAGGAGAATTGATTCACTCTGCACTTATAGCACAAGCTGAACCTGAGAAGTGGCTGAAAGTTATGAAAGAGGAGATCAACTCTATAGAGAAGAATCAGACTTGGGAATTGGTGGATCCTCCTTCAAATAAGAAACCCATAGCACTAAAATGGGTCTATAAAGTAAAGGTTAACCCAAGAGGTGAAGTGGTGAAGAACAAAGCCAAATTTGTGGCAAAGGGTTTTTTGCAGAAAGCTGGAATAGACTATGGAGAATTCTATGCACCAGTAGCCAGGATTGAGACTATCATGTTGGTAGTAGCCATTGCAATTAATGCTGGTTGGTCTATGCATAAGCTAGATGTGAAATCTACCTTTCTCAATGGTCCACTTGAAGAAGAGGCTTATGTGAATCAGCAGCTGGGTTTTGTTGTTAAAGGCAAAGAAAACAAGGCACCAAGAGCTTGGAACAAGAGAATTGATGGTTACCTATCTCAGATTGACTTTAAAAAATACACCTCAGAATATGGAGTTTATGTGAAATGTTGGAAAGGCAGCTTGAAATCAGAGAAATTGCTTATATGTGTGTATATTGATGACCTTTTGATTACAGGCAGTAGTGAGGGAGAAATTGCTAGTTTTAAGAAACAGATGATGAATGAGTTTGAGATGAGTGGCCTTGGACTCCTCTCTTACTTCTTGGGGATTGAATTTGAAACGACTCGTTATGTAATGGTTATGCATCAAACCAAGTATGCCAAGGATCTATTGAAGAGGTTCAATATGCAGCAAAGTAATCCAGTAGGAACACCAGTTGGACTCAATTTAAAGAAGGAAATAGATGAAGAACAAGTTGATCCTACTCACTATAGAAGGATAGTTCATGCACGAGCCAAAGCACTCTCACTTATTAGCTGCAAAGAGAATATTGAGGTATGTGCAGGGGACGATTGGTGTAGAGACAAGCAGGATAGAAAAAGCACTGCATGGTACATTTTCTTCTATGGAGGAGCTCCGATTTCTTTGTCCTCTACAAAGGAACCTGTAGCTGAGTATATTGTAGCTTTTGAAACAGCTTGTCAAGCAATATGGCTAGATGCTTTATTGGGAGAATTACAGGAGAAGAATTCGAAGAAGAAGGTAAACAAGGCATCCAGCATCTCATGGGAGGAGCAAACATATAGAAAGAGCAAACATATAGAAACAAGGTTTCACTTCTTAAAAGAACAAGTCAGCAATGAAAAGCTGCAAATAGAACACTGTAGAACTGAAATTCAGTTTGCAAACATATTCATTAATGCCTTGAAGCGGGAAAGGTTTAGGTGTTTGAGAGTTTCTATTGGAATTGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACAAAAAGAAACTAGGGACTCAACAATGCAACATAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATATGCAAGCTTTTTCTAGTGCTGAGTTTATGGATAGAGATCTAGAAGCTATGCAGTCAGAACACATGTCCTCTGTTCCAAATGCTCCTTTATTAGTTAAAGAGGGAGATGCTGAACCTCCACCATTGCAGACCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCAATGATTCTGAATCTGATGATAATGACCTTTACTTATCAGAGTGCAGAATATTATTAGTTGGTTTTGATGTTTGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGCGGAGGCTCCCGGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACTTCATGGCTGGAAGATTGTGACCGTGAAAAGAAAGAAGTTCCTGTTCTTAGGAGACACATTGCATATGATATATTTCATCCAAAAGCAAGCTTGGTAAAAGGAGCAGCAACAAGCAGTATGCCTATGGAACACAGTAAAAGCACCAGCTTTCATCAAAACTCACAGAATGGTCATGTGGACTTTGAAATTGTAAAGCCAGAATATTTGGAGAAAAGAAAAGAAGAGAAAACAGACATGGGTATAAATGGGCACTCATTCAGTAAAGCAATAGGCAGAACTATGCTGCAAAATCAACTTCCTAATAGTAAATTGAGGGCACAAAGGATGACACAACATGACTCCATTGTTCAATACGCAAAATCAGCAAATGTATTCAGAGGGAAACTATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAAATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTGTACACTATACTATTGAGTGTCATGGTGTAACACCTGTGTTGACAGGTGATTCCAAGTGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCTGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTGTGTGTTTCCCAGTATGAGGAGAAAGACAGAATTCTCCTAAGGAACTTGTGTTTTGTTCTGGGAGCTAAACTTGTGGAGAAGTTGACTAAGAAGGTTACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAAGCTGCTTGTAAATGGGGGATCAAATCAGTTACATCTGAATGGATATTTGAATGCGTCAAACAGTTGTTTGATAATTGGAGAGTCAAAATGCCGACCATCTTTGGCTTCCAAGATGTGATAGAAGTGGTGACAATTGGGTTTGCAGAGCCTGGTAGGAATGCAATTGAGGAGCAGAGACTGATCTTGCTGTCACAGTTTCTCATCTACCAGTGTGTAACAAAGATATTCAACAAGATTTCCAATGCATCCACCTCAAAGGAAGCATGGAAGATTCTGGTGAAAACATATGGTGATGGAGAAAAGAACAAGAAAGTTAAATTGCAGACATTGAGAAGGCAGTATGAGCTTCTCAACATGGAGGAGAAAGAATCGGTTGCAAATTATTTTGACGGGATTCAAGAATTGGTCAATGCAATGAGAATCTGCAAAGAGAAGGTTACAGATCAGCAAGTGGTAGATAAAATATTGAGGACCTTACCACCAGAATTTGATTATATAGCTGCTACAATCAAGGAGTCGAAGGACCTAGATACTATGGAGGTTGAAGAATTGCAACACTCCCTTGAGGCACTTGAGATGAGGATCAATAAGAAAAGATCCATTTGA 3510 0.3983 MRCHNCRNVGHYARECWAGEGAKNKPNNHAHLAQDEGTDSEAVVLLTITSNEAQPRIPIEEELIATPVFNKASVVRRPLQSRDQELLFQDSTVNLEGELIHSALIAQAEPEKWLKVMKEEINSIEKNQTWELVDPPSNKKPIALKWVYKVKVNPRGEVVKNKAKFVAKGFLQKAGIDYGEFYAPVARIETIMLVVAIAINAGWSMHKLDVKSTFLNGPLEEEAYVNQQLGFVVKGKENKAPRAWNKRIDGYLSQIDFKKYTSEYGVYVKCWKGSLKSEKLLICVYIDDLLITGSSEGEIASFKKQMMNEFEMSGLGLLSYFLGIEFETTRYVMVMHQTKYAKDLLKRFNMQQSNPVGTPVGLNLKKEIDEEQVDPTHYRRIVHARAKALSLISCKENIEVCAGDDWCRDKQDRKSTAWYIFFYGGAPISLSSTKEPVAEYIVAFETACQAIWLDALLGELQEKNSKKKVNKASSISWEEQTYRKSKHIETRFHFLKEQVSNEKLQIEHCRTEIQFANIFINALKRERFRCLRVSIGIEFFPVQHGSVSSQKETRDSTMQHSQEKDIGKLQSAASSGATDSNMQAFSSAEFMDRDLEAMQSEHMSSVPNAPLLVKEGDAEPPPLQTSNELNFDGAVANDSESDDNDLYLSECRILLVGFDVCEMRKLVNMVRKGGGSREKKDVRSLAALGVIYVVKTSWLEDCDREKKEVPVLRRHIAYDIFHPKASLVKGAATSSMPMEHSKSTSFHQNSQNGHVDFEIVKPEYLEKRKEEKTDMGINGHSFSKAIGRTMLQNQLPNSKLRAQRMTQHDSIVQYAKSANVFRGKLFCFSNLFPEERRAEIVQWISQGGGEIISGQTKQSVHYTIECHGVTPVLTGDSKCLYISSHWIRSCLEAGSLLDVDSHILYSPLPCCVPLPGFESFRLCVSQYEEKDRILLRNLCFVLGAKLVEKLTKKVTHLLCKFTNGPKYEAACKWGIKSVTSEWIFECVKQLFDNWRVKMPTIFGFQDVIEVVTIGFAEPGRNAIEEQRLILLSQFLIYQCVTKIFNKISNASTSKEAWKILVKTYGDGEKNKKVKLQTLRRQYELLNMEEKESVANYFDGIQELVNAMRICKEKVTDQQVVDKILRTLPPEFDYIAATIKESKDLDTMEVEELQHSLEALEMRINKKRSI 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr486g00004 1169 SUPERFAMILY DNA/RNA polymerases 126 339 IPR043502 -
Mupr486g00004 1169 Gene3D BRCT domain 813 910 IPR036420 -
Mupr486g00004 1169 ProSiteProfiles BRCT domain profile. 917 989 IPR001357 -
Mupr486g00004 1169 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 127 360 IPR013103 -
Mupr486g00004 1169 Pfam gag-polypeptide of LTR copia-type 1041 1165 - -
Mupr486g00004 1169 ProSiteProfiles Zinc finger CCHC-type profile. 2 16 IPR001878 GO:0003676|GO:0008270
Mupr486g00004 1169 Pfam twin BRCT domain 921 982 IPR001357 -
Mupr486g00004 1169 CDD BRCT_TopBP1_rpt2_like 915 989 - -
Mupr486g00004 1169 SUPERFAMILY BRCT domain 913 989 IPR036420 -
Mupr486g00004 1169 SMART BRCT_7 914 990 IPR001357 -
Mupr486g00004 1169 SMART BRCT_7 645 706 IPR001357 -
Mupr486g00004 1169 SMART BRCT_7 818 894 IPR001357 -
Mupr486g00004 1169 FunFam Transcription coactivator 813 910 - -
Mupr486g00004 1169 MobiDBLite consensus disorder prediction 563 580 - -
Mupr486g00004 1169 Coils Coil 1068 1088 - -
Mupr486g00004 1169 MobiDBLite consensus disorder prediction 612 642 - -
Mupr486g00004 1169 Coils Coil 1149 1169 - -
Mupr486g00004 1169 ProSiteProfiles BRCT domain profile. 816 904 IPR001357 -
Mupr486g00004 1169 Gene3D BRCT domain 911 998 IPR036420 -
Mupr486g00004 1169 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 540 989 - -
Mupr486g00004 1169 SUPERFAMILY BRCT domain 647 710 IPR036420 -
Mupr486g00004 1169 Pfam BRCT domain, a BRCA1 C-terminus domain 818 901 IPR001357 -
Mupr486g00004 1169 SUPERFAMILY BRCT domain 819 906 IPR036420 -
Mupr486g00004 1169 CDD RNase_HI_RT_Ty1 405 526 - -
Mupr486g00004 1169 MobiDBLite consensus disorder prediction 546 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr486g00004 Mupr-Chr486 8265 19553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr486g00004 586 989 Core DNA Replication Machinery Family AT1G77320 44.368 1.64e-100 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr486g00004 K10728 - gmx:100804966 743.036