Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4858g00001 ATGTGGTCCGAAAGGGAAGCATCTATTGAATTTTTGGGCCCCAATTCCAGCAGCAGATCTTCCAACGCACCATTTTATCCACAACGAGTCTTTTCCGGAATCCTCAAACCCCATAAACCTTCAAAATCTTCGACAACGCCAGCCTATTTAAACTCAACCCCTGAGACTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGCGTGCTGCATTTTCTTTAACTTGGATTGTTCCTACTTGTAGTTCCCCAGATTATCCTATGGCAGACTTGGATAACCCGCTGCATGGAATTGGGAAGCATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCGGTGACTCTTGAGACTGGTCAGACATTTGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACGTGTCCTATCACTCGCCAGAAGCTGCAAAACACCCAGTTACCTAAAACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACGCAACCCTCATTTGGTCTCACCGCCGTATGATAGTCCATACGAAGATACCGAGGCAAATGTGAAGTCATCAATGCCTTCAACTTCACCTAATAGTGTCATAACACAAGCCACAGTTGACGGGATGATGAATGAGTTACGCTGTGCAATCAATAACCTGTATATGTCAGAGGTTCTCCAGGAATCTGAAACGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGAATCTAGGAGTGGATATCCATAGCATGCTATCAAAACCTGCCATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGGTCTATAGACAATGCTGTTATTATGACTCTCACACGTGTGGACACTGACGTGGAATGTATCGTGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTTCTAAACCCTTCCACTGTGAGTCTTGCAGAGATGGCCGTCGTGGAGTCTCTCATAACAGTTTTCAATAAGAAAGAGGAAGAGTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGAATTACTGGAAGCAGTGAAGAGTCAATTGCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAGCAGTTGGAACTATTGTCAGCAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATATTGTTGAGATGCATGGAGGAAGATGGGACTTGCAGGAACAACATTGCCGATAAAGCCGAGTTGGCACCTATTTTGGAAAGCTTGATTGGTGCAACTGATGGAGAGCTTTTTCTGATGGATTCCTTTGTGGTTCCCTTCAGGAGGACATTGAGTGAACAAATCCTCCACACAGCCCTTCATGATCAATGTCCAGCCATGGCTGGTCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCGATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCTGTTACCCAATTAGCAGCTGCTGATACAATTATGTCACTGCAAGGGAGTTTTGACTTCTCTGGAAACCCTCTAACCAGAGAAGTCCTTCTTAAACGTGCAGGTTTCGACAAAATTTCCACAAGTCTTGTACAGGTGGATCAAATCAACAACTTCAGCCAAGAAATTGATATAACTCCAGTAATGTCCTTCGAAACTCTTCCCGAAGAAGAGAAGGCAGCTGATGTTTGGGAAAGAAGAATTGCATCTATTCTAGTTAGCCATGAGTTTGGCACACTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAACATGCTTTATATCAGCTACATGGCTCATATACATGTTGGCCATTCTACCAGATACAGGGATACATGTAGTAGCTCGTGCTTGCTTGCTGAAGCAGTTCGTAGCTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCACTTCTCTGACGGCTTAGGTGATCTAACTTCCTACGCTAAGGATATCATAAAAGGGTTGAGAGAGCTGAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAAGTTCTGGTTGAAGAAAATGAATCTAAAGCGGAAATTTGGATCCATAAAGAGCTCATAAAAGAAGACTGCAGCGAGAATGGAGAGGTGCTGTCTGTTATTTGCTTTAAGGATAAATTTTTTTCAGGCCATACAAATGGCACTATTAAGGTCTGGTCTATTGGAAAGGCATCAATACATTGTGTACAGGTGCATGATATGAAGGATCAGATTCATAATTTAATTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGAACTGGTATCAAGTGCTTGGCTCATGTTCATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTGAATACTATTCAAAGTGGTTATAAAAGATTACTTGGAAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATTTGCAGCTGGCTCTTCCTTGGATGGATCTGCTATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCACTACAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGAATTGATTTATTTAGGGTGCAAAGGGGGTACTGTGGAAATTTGGGATAAGAAGAAACACAATAGAGTTGACACGTTGCAAATGGGTACGAATTGTAGGGTTAATTGCATGGCTCTAGACAGCAATGAAGAAGTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGATATATTTGGATGGAAACTTCAGTAG 2934 0.4226 MWSEREASIEFLGPNSSSRSSNAPFYPQRVFSGILKPHKPSKSSTTPAYLNSTPETDFSLDESLLSSSSDSEAENERAAFSLTWIVPTCSSPDYPMADLDNPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTFERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPHLVSPPYDSPYEDTEANVKSSMPSTSPNSVITQATVDGMMNELRCAINNLYMSEVLQESETAVLQIEKFWRGVNLGVDIHSMLSKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSIDNAVIMTLTRVDTDVECIVALFKNGLTEAVVLLYLLNPSTVSLAEMAVVESLITVFNKKEEELVKMCLKPKTAAVLLLARITGSSEESIASSVVNTLFSEKAVGTIVSSLGADLAKERIAAVEILLRCMEEDGTCRNNIADKAELAPILESLIGATDGELFLMDSFVVPFRRTLSEQILHTALHDQCPAMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTIMSLQGSFDFSGNPLTREVLLKRAGFDKISTSLVQVDQINNFSQEIDITPVMSFETLPEEEKAADVWERRIASILVSHEFGTLFEALADGMKSRNPELRSTCFISATWLIYMLAILPDTGIHVVARACLLKQFVAKLNSAKDVEDRILSMLALNSFLHFSDGLGDLTSYAKDIIKGLRELKRSCPLASKMLKVLVEENESKAEIWIHKELIKEDCSENGEVLSVICFKDKFFSGHTNGTIKVWSIGKASIHCVQVHDMKDQIHNLIVTNSLACFIPQGTGIKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIHALQIHGELIFAAGSSLDGSAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHNRVDTLQMGTNCRVNCMALDSNEEVLVIGTSDGQIQDIFGWKLQ 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4858g00001 977 SMART WD40_4 850 890 IPR001680 GO:0005515
Mupr4858g00001 977 SMART WD40_4 932 975 IPR001680 GO:0005515
Mupr4858g00001 977 SMART WD40_4 893 929 IPR001680 GO:0005515
Mupr4858g00001 977 SMART WD40_4 744 781 IPR001680 GO:0005515
Mupr4858g00001 977 SUPERFAMILY RING/U-box 110 186 - -
Mupr4858g00001 977 Gene3D - 257 735 IPR011989 -
Mupr4858g00001 977 MobiDBLite consensus disorder prediction 10 24 - -
Mupr4858g00001 977 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 88 784 - -
Mupr4858g00001 977 MobiDBLite consensus disorder prediction 34 53 - -
Mupr4858g00001 977 ProSiteProfiles U-box domain profile. 110 185 IPR003613 GO:0004842|GO:0016567
Mupr4858g00001 977 SMART Ubox_2 114 178 IPR003613 GO:0004842|GO:0016567
Mupr4858g00001 977 CDD RING-Ubox_PUB 112 164 IPR045210 -
Mupr4858g00001 977 MobiDBLite consensus disorder prediction 1 24 - -
Mupr4858g00001 977 SUPERFAMILY WD40 repeat-like 754 969 IPR036322 GO:0005515
Mupr4858g00001 977 Gene3D - 736 977 IPR015943 GO:0005515
Mupr4858g00001 977 Coils Coil 413 433 - -
Mupr4858g00001 977 MobiDBLite consensus disorder prediction 187 210 - -
Mupr4858g00001 977 MobiDBLite consensus disorder prediction 38 53 - -
Mupr4858g00001 977 SUPERFAMILY ARM repeat 269 716 IPR016024 -
Mupr4858g00001 977 Pfam U-box domain 112 182 IPR003613 GO:0004842|GO:0016567
Mupr4858g00001 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4858g00001 Mupr-Chr4858 1451 7194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4858g00001 112 178 U-box Gene Family AT1G23030 52.239 1.48e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4858g00001 - - gmx:100787950 1596.25