Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4820g00001 TTGCATAGTTTCCACCTGAAGCCATCTTCACAGTCTGGTCCTTATCAGGATTTTTTTATAAAGACAAAACTTCATAGTAGCAATGAGTTTAAGAATAAAAGCATGGTGCAGGCTAGAGCTGGTATAGATTATGAATCCTCTTACGGTAAAGTCCGCCCAAATGATACTATCCTGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAATGCCCTTACAGACATGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCAGGGGAGATGGCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGTTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACGAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCTAACAAACTAGTTATTAAGGGCCTAAGGCTTAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGGGCAGTCATATCACAGCAGCAGAACCAGGACCAAAACCAAGGAATGCTTTACTATAACAATCCACCAGCTCTTCAGCAAGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCCCAAGACGGTCCCCCTGGTGGTCCTTCTGGGTCAGGGGAGAATAAGCCCAGTTTGGAGAAGCAGCAAATGCAACACTATGCCCACCCAATGATGCCTCCTCCCCCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCAGCCAGTTCCCCCTTATCAACAGTACCCACCTCCATACAATGCTGCAGTGGCTCCATCCCAGCCACCAGCTTCAAATCATCCTTATCAGCATTCTAAGCAGCCAGGGTCTGGACAGGCTGCATCTGCCCCAGCTGAAACTGGAGCATCAGCATCAGGGTCACAGCAGCAA 1173 0.4672 LHSFHLKPSSQSGPYQDFFIKTKLHSSNEFKNKSMVQARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDVRVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQNQGMLYYNNPPALQQERSYYPSMDPQRMGALVPSQDGPPGGPSGSGENKPSLEKQQMQHYAHPMMPPPPGQYHHQYYPPYGYMQPVPPYQQYPPPYNAAVAPSQPPASNHPYQHSKQPGSGQAASAPAETGASASGSQQQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4820g00001 391 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Mupr4820g00001 391 FunFam Zinc finger CCCH domain-containing protein 4 61 120 - -
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 211 233 - -
Mupr4820g00001 391 Gene3D - 61 117 - -
Mupr4820g00001 391 SMART rrm1_1 141 209 IPR000504 GO:0003723
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 274 323 - -
Mupr4820g00001 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 213 IPR000504 GO:0003723
Mupr4820g00001 391 SUPERFAMILY CCCH zinc finger 71 94 IPR036855 GO:0046872
Mupr4820g00001 391 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Mupr4820g00001 391 Pfam Torus domain 54 106 IPR032297 -
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 216 232 - -
Mupr4820g00001 391 FunFam Zinc finger CCCH domain-containing protein 40 125 221 - -
Mupr4820g00001 391 Gene3D - 124 222 IPR012677 -
Mupr4820g00001 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 200 IPR000504 GO:0003723
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 338 352 - -
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 353 391 - -
Mupr4820g00001 391 SUPERFAMILY RNA-binding domain, RBD 134 222 IPR035979 GO:0003676
Mupr4820g00001 391 CDD RRM_RBM22 139 212 - -
Mupr4820g00001 391 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 29 288 IPR039171 GO:0003723
Mupr4820g00001 391 MobiDBLite consensus disorder prediction 338 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4820g00001 Mupr-Chr4820 660 2998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4820g00001 127 201 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 4.40e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4820g00001 K12872 - gmx:100778975 567