Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4806g00006 ATGGATGTTGCTGCGGTGGAAGAACATCTATTTGCCGCAAGTGATGCCAAGTTACATGGCCAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTATCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCTTTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCGGCACTGCTCAGACTGTAGTAAACTTTATTTGGCTATAACTGGAGATTCTGTCCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCGACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAACGACTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCGCATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCGAACTGAGGAAGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTCAGAAACGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCTCCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATAGTCTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAACTCAGTTGCTTTAATTTCAAACCAAATAATAGTAGGAAATCAGGGCAAATGCCTCTTCCACCAGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAGTGGCTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTTCACATCTTGGTTTGACTCCTAATTATTGTGTTAAGGGTCTCGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGACCTCCTGAATCTCTTGATCTTAACTACTGGGGATTGGTACTATCAGAATCTGAATCTACAAATTCAAAATCTGTAGATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCAAGTGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAATTGTGTCTGCACAAGAGGACACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGATTGAAGCGGACAATTGGAGGAGGCAATGTGATGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTATCGAAGCACTTTTGCAGTTTTTGCGATCAGCTGTATGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAACAATGGCTCTCTTCAACTTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCGTTGTTAGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCACGAGTCAGGCTGTCCAGTTCCTAATTCAGCTTCTTCAATCTAACTCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTACAATCTTTCTACATTGCCCTCCAATATTCCATACCTCCTTTCATCTGGCATCATTAGTGGCTTACAATTCCTTCTTGTAGGCGAGGGTGATTGCATGTGTACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATCGTATCAACTCCCGGATTCATTGGTGCATTGGCTTCGATATTGGACACTGGTGAGCTCTTAGAACAGGAGCAAGCTGTTTCTTGCCTTCTAATTTTGTGCAACAGAAGTGAGACATGTAGTGAAATGGTCCTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCACAAGAGGTAGAGAAAAAGCTCAGAAACTCCTGATGCTGTTTCGAGAGCAGCGACGAGACCATTCACCAGTTAAGACACACGAGTCCCCACCTGAAACCAGTGATTTGTCTATGCCGCCTGCTGAAATGAAACCTCAATGCAAGTCGATTTCGAGAAGAAAGTCTGGAAAAACTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2292 0.4123 MDVAAVEEHLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLRHCSDCSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGIASSRAALAERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDSLPGSHCQAFDRQLSKLSCFNFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWLSDGHNNCPKTQQKLSHLGLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLSESESTNSKSVDSVSSCKLKGVQVVPLEESGISEESVENGTEIVSAQEDTEQYFSFLKVLIEADNWRRQCDVVEQLRLLLRDDEEARIFMGANGFIEALLQFLRSAVCEGSLMALESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGTSQAVQFLIQLLQSNSDVQCKQDSLHALYNLSTLPSNIPYLLSSGIISGLQFLLVGEGDCMCTEKCIAVLINLATSQVGREEIVSTPGFIGALASILDTGELLEQEQAVSCLLILCNRSETCSEMVLQEGVIPALVSISVNGTTRGREKAQKLLMLFREQRRDHSPVKTHESPPETSDLSMPPAEMKPQCKSISRRKSGKTFSFFWKSKSYSVYQC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4806g00006 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mupr4806g00006 763 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Mupr4806g00006 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Mupr4806g00006 763 SUPERFAMILY RING/U-box 279 355 - -
Mupr4806g00006 763 Coils Coil 175 195 - -
Mupr4806g00006 763 Gene3D - 425 602 IPR011989 -
Mupr4806g00006 763 PANTHER U BOX DOMAIN-CONTAINING 21 708 - -
Mupr4806g00006 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Mupr4806g00006 763 MobiDBLite consensus disorder prediction 709 739 - -
Mupr4806g00006 763 SMART arm_5 454 498 IPR000225 GO:0005515
Mupr4806g00006 763 SMART arm_5 539 580 IPR000225 GO:0005515
Mupr4806g00006 763 SUPERFAMILY ARM repeat 424 702 IPR016024 -
Mupr4806g00006 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mupr4806g00006 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Mupr4806g00006 763 Gene3D - 603 709 IPR011989 -
Mupr4806g00006 763 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4806g00006 Mupr-Chr4806 75564 79604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4806g00006 1 762 U-box Gene Family AT1G24330 65.938 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4806g00006 - - gmx:100794099 1365.9