LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr4800g00001	ATGGGTCGTAAGCACGACGCCGTTTCGGTTAGCGAAACAGTCGTCGAAGAAGCCCCCTACAACCCCGACCTCGAATCCCAGAAGAAGAAGAACAACAAAAAGAAGAAGAATAAAGACAAGCATCAAACCGAAGCCAGCCCCAAACGAAAGCTCGACGAACTTGATCCTCAAAACGGTACCGAATCAAAGAAGAAAAAGAAGAAGCACCTCGAGTCCAAAGAGAACGCCGAGGAAACCAACGGTCACAACAACGGCAACGGCGCTAATCCTGACGAAACGGTGGCGGACGGGCCCGTGGTGGTCACCGGGAAGAATGCCGGCGACGCGAAATACGCGGCGGTGAAAAGCTTCGTGGATTCGGGGCTGCCTGAGAACGTGCTCGAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATCGCTGCCACTGGTTCAGGGAAGACGTTGGCTTTTGGCTTACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGAGTAAAGCTTCCAAGGGTCGGAACCCTCTTTGCCTCGTGCTCTCTCCCACTAGAGAGCTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTACGTCTTGTGGAGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGACCTGATTGAAATGGGTGTCTGTTGCCTAAAAGAAGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTTGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACCTGGCCTTTACCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTGAAAGTTGTTGTAGGTTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCCTGGATGACCGTTCTCGTGATAAGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTTTTTGTTTTGTACAAAATGGAAGCCAAACGAGTTGAAAGTATGCTTCAACAAGGGGGTTGGAAGGCCGTGTCAATACATGGGGACAAAGCCCAACATGATCGCACAAAGGCACTATCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACCGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAGTTGTGCCGGATGCCCTCTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGACGACGAAGACTAA	1605	0.4748	MGRKHDAVSVSETVVEEAPYNPDLESQKKKNNKKKKNKDKHQTEASPKRKLDELDPQNGTESKKKKKKHLESKENAEETNGHNNGNGANPDETVADGPVVVTGKNAGDAKYAAVKSFVDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLGKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGTSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQSNRVLVFVLYKMEAKRVESMLQQGGWKAVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEIAVDAPKSKKITFDNSDDED	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr4800g00001	534	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	497	IPR001650	-
	Mupr4800g00001	534	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	115	141	IPR014014	GO:0003724
	Mupr4800g00001	534	FunFam	ATP-dependent RNA helicase RhlB	324	501	-	-
	Mupr4800g00001	534	Pfam	DEAD/DEAH box helicase	138	304	IPR011545	GO:0003676\|GO:0005524
	Mupr4800g00001	534	Gene3D	-	24	324	IPR027417	-
	Mupr4800g00001	534	Coils	Coil	24	44	-	-
	Mupr4800g00001	534	Gene3D	-	325	500	IPR027417	-
	Mupr4800g00001	534	CDD	DEADc	131	322	-	-
	Mupr4800g00001	534	MobiDBLite	consensus disorder prediction	38	78	-	-
	Mupr4800g00001	534	MobiDBLite	consensus disorder prediction	1	100	-	-
	Mupr4800g00001	534	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	471	IPR027417	-
	Mupr4800g00001	534	SMART	ultradead3	132	338	IPR014001	-
	Mupr4800g00001	534	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	144	321	IPR014001	-
	Mupr4800g00001	534	SMART	helicmild6	377	458	IPR001650	-
	Mupr4800g00001	534	Pfam	Helicase conserved C-terminal domain	349	458	IPR001650	-
	Mupr4800g00001	534	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	50	493	-	-
	Mupr4800g00001	534	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	267	275	IPR000629	-
	Mupr4800g00001	534	CDD	SF2_C_DEAD	335	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr4800g00001	Mupr-Chr4800	3688	8500	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr4800g00001	114	466	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.521	1.13e-55	190

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr4800g00001	K14811		-	gmx:100806057	945.651