Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4795g00002 ATGCAACTGCATGTAGCAGATCGGAGCTCCGATGTGATTCGACAAATCGACGTTAATTCGGCGGCGGAGTGCGACGAAGACAACGGCGTTTCGTCGCCGAACAGTGCGGTGTCGAGCGTGAGCGGTGGCAAGCGGAGCGAGAGGGACAACGATAATGCCGCCGTGGCGGCCAGCGAGAGGACGTCGTGTTCGCGTGGGAGCGACGACGAAGACGGAGGTGGCGACGCCGCGAGGAAAAAGCTGAGGCTGACTAAGGAACAGTCCATGTTGTTGGAAGAAACGTTCAAGGAGCATAACACGCTGAATCCGAAACGGAAGCTAGCCCTGGCTGAGAAGTTGAGTCTGAAGCCTAGACAAGTAGAGGTCTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGATGCTGTGAGAATTTAACTGAAGAGAATAGGAGGTTGCACAAGGAGGTCCAAGAGCTTAGGGCATTGAAACTATCCCCACAAATGTACATGCATATGAATCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTGCTCACTCCTCTTCATCCTCCTCCCCTGCCACCGTCCATTCGAGGGTTGCGCCAAGCAATCGCAAACTGTTTGGTGCAAATGTCCAACGGTCGAGAAAGAGAATCCGAATATGTGATGTTCTCATCAATTTGGGATACCACTTCCTAGGGAAAAGGTGGGGTGGTGGGAAGAGGGTTTAA 753 0.5179 MQLHVADRSSDVIRQIDVNSAAECDEDNGVSSPNSAVSSVSGGKRSERDNDNAAVAASERTSCSRGSDDEDGGGDAARKKLRLTKEQSMLLEETFKEHNTLNPKRKLALAEKLSLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERAHSSSSSSPATVHSRVAPSNRKLFGANVQRSRKRIRICDVLINLGYHFLGKRWGGGKRV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4795g00002 250 CDD homeodomain 78 135 IPR001356 GO:0003677
Mupr4795g00002 250 Pfam Homeobox associated leucine zipper 134 168 IPR003106 GO:0006355|GO:0043565
Mupr4795g00002 250 MobiDBLite consensus disorder prediction 25 43 - -
Mupr4795g00002 250 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 202 - -
Mupr4795g00002 250 MobiDBLite consensus disorder prediction 188 206 - -
Mupr4795g00002 250 SMART HOX_1 76 138 IPR001356 GO:0003677
Mupr4795g00002 250 FunFam Homeobox-leucine zipper protein 18 64 139 - -
Mupr4795g00002 250 Coils Coil 147 167 - -
Mupr4795g00002 250 MobiDBLite consensus disorder prediction 188 207 - -
Mupr4795g00002 250 SUPERFAMILY Homeodomain-like 65 135 IPR009057 -
Mupr4795g00002 250 MobiDBLite consensus disorder prediction 20 76 - -
Mupr4795g00002 250 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Mupr4795g00002 250 Pfam Homeodomain 78 132 IPR001356 GO:0003677
Mupr4795g00002 250 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Mupr4795g00002 250 Gene3D - 72 139 - -
Mupr4795g00002 250 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Mupr4795g00002 250 Pfam HD-ZIP protein N terminus 9 49 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4795g00002 Mupr-Chr4795 6906 9036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4795g00002 3 191 Homeobox Transcription Factor Family AT3G60390 64.352 2.90e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr4795g00002 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4795g00002 K09338 - gmx:100819624 342.813