Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr4790g00005 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGACGACGCCGTCTCTTTTCTCCTTAACGATGATGATGACGACGTCGTTGGACCCCTCCCCTTTCCCTTCCCTGTCCTCCAAACGGCTCCCTGCGGCTTCGTCGTCACCGACGCCCTCGATCCCGACCACCCTATCATTTACGTCAACGCCGTCTTCGAGATGGTCACCGGCTACCGCGCCGAGGAATGTCGAGGTCCATTTGCCAAGAGAAGGCATCCGTTGGTGGACTCGACTGTTGTTTCAGAGATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGTTAACGCCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCAGGTTCTACGATTAAGGAATCTATTAAATCATCAGATCGGTTTCATTCTGTGCTTTCCTCATTGAATCCACTTCCAGTGAGGGACCGTAATGTCACTCGTGGAGTTTGTGGGATATTGCAATTGAGTGACGAGGTATTGTGTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCAATTGTATGATCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGAAGTGAGACTACAAGTGTTTTAGAGACTGTGCCTGGTGCAAAGAGACTTGGATGGGGTCGGCTGGCTAGGGAACTGACAACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCCTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTCGTATTGGATCTCAATTCTAGTAATCCTGAATGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGCCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTAGATGCAAAGCCTCCAACTTGGCGGGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCTTGGCACAGCTCCTGCACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCAATGGAGAAACCGGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCACGTCTGGGTCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTACGTTTCCGTTCCAGTGATGTATTCACTATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCCGGCGCTGGAAATCCTGGAGGAATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTTTACCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTGGCAGGCCTTCATTCTGCCTCCCAGCTTTACCTACTAGATCCAACTGATGAGAAACCTACATGGAGAATACTAAATGTACCTGGGTGCCCTCCAAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGAGGGACAAGGGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTTAGTGAGCTTCATGAACTTTCCTTGGCAAGTTCTGTCATCTAG 1815 0.4832 MEWDSNSDLSGDDDAVSFLLNDDDDDVVGPLPFPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMVTGYRAEECRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTIKESIKSSDRFHSVLSSLNPLPVRDRNVTRGVCGILQLSDEVLCLKILARLTPRDIASVGSVCRQLYDLTKNEDLWRMVCQNAWGSETTSVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYLLDPTDEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr4790g00005 604 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 23 601 - -
Mupr4790g00005 604 Gene3D PAS domain 35 152 - -
Mupr4790g00005 604 Pfam Galactose oxidase, central domain 352 399 - -
Mupr4790g00005 604 NCBIfam PAS domain S-box protein 52 140 IPR000014 -
Mupr4790g00005 604 Gene3D - 492 603 IPR015915 GO:0005515
Mupr4790g00005 604 Gene3D - 265 491 IPR015915 GO:0005515
Mupr4790g00005 604 ProSiteProfiles PAS repeat profile. 37 102 IPR000014 -
Mupr4790g00005 604 Pfam F-box-like 200 238 IPR001810 GO:0005515
Mupr4790g00005 604 CDD PAS 41 133 IPR000014 -
Mupr4790g00005 604 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 141 IPR035965 -
Mupr4790g00005 604 Pfam PAS domain 42 141 IPR000014 -
Mupr4790g00005 604 SUPERFAMILY Galactose oxidase, central domain 275 589 IPR011043 -
Mupr4790g00005 604 FunFam Adagio protein 1 189 236 - -
Mupr4790g00005 604 SUPERFAMILY F-box domain 184 252 IPR036047 GO:0005515
Mupr4790g00005 604 FunFam Putative LOV domain-containing protein 470 603 - -
Mupr4790g00005 604 Gene3D - 178 236 - -
Mupr4790g00005 604 FunFam Putative LOV domain-containing protein 265 469 - -
Mupr4790g00005 604 CDD F-box_AtADO-like 191 237 - -
Mupr4790g00005 604 Pfam Kelch motif 512 559 IPR011498 GO:0005515
Mupr4790g00005 604 Pfam Kelch motif 445 496 IPR011498 GO:0005515
Mupr4790g00005 604 Pfam Galactose oxidase, central domain 288 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr4790g00005 Mupr-Chr4790 15462 24059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr4790g00005 37 167 AGC Kinase Gene Family AT5G58140 35.766 1.07e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr4790g00005 K12115 - gmx:100802828 1131.32